Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   FOC70_RS00320 Genome accession   NZ_CP054000
Coordinates   66633..68393 (-) Length   586 a.a.
NCBI ID   WP_080565297.1    Uniprot ID   -
Organism   Finegoldia magna strain FDAARGOS_764     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 43523..74158 66633..68393 within 0


Gene organization within MGE regions


Location: 43523..74158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC70_RS00205 (FOC70_00205) - 44375..44536 (-) 162 WP_002841087.1 helix-turn-helix transcriptional regulator -
  FOC70_RS00210 (FOC70_00210) - 44759..45061 (-) 303 Protein_44 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  FOC70_RS00215 (FOC70_00215) - 45151..45399 (-) 249 WP_002840988.1 hypothetical protein -
  FOC70_RS00220 (FOC70_00220) - 45396..45983 (-) 588 WP_002840847.1 type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein -
  FOC70_RS00225 (FOC70_00225) - 46482..48158 (-) 1677 WP_002841050.1 recombinase family protein -
  FOC70_RS00230 (FOC70_00230) - 48256..48417 (-) 162 WP_002841033.1 hypothetical protein -
  FOC70_RS10165 - 49117..49209 (-) 93 Protein_49 replisome organizer -
  FOC70_RS00235 (FOC70_00235) - 49275..50207 (-) 933 WP_002836989.1 AraC family transcriptional regulator -
  FOC70_RS00240 (FOC70_00240) - 50204..51595 (-) 1392 WP_002836952.1 ATP-binding cassette domain-containing protein -
  FOC70_RS00245 (FOC70_00245) - 51589..52284 (-) 696 WP_002837063.1 energy-coupling factor transporter transmembrane component T -
  FOC70_RS00250 (FOC70_00250) - 52284..52865 (-) 582 WP_002840789.1 MptD family putative ECF transporter S component -
  FOC70_RS00255 (FOC70_00255) - 52876..54597 (-) 1722 WP_002837056.1 ABC transporter ATP-binding protein -
  FOC70_RS00260 (FOC70_00260) - 54594..56342 (-) 1749 WP_002836959.1 ABC transporter ATP-binding protein -
  FOC70_RS10040 - 56722..57456 (-) 735 Protein_56 phage replisome organizer N-terminal domain-containing protein -
  FOC70_RS00275 (FOC70_00275) - 57541..58152 (-) 612 WP_002837070.1 class I SAM-dependent methyltransferase -
  FOC70_RS00280 (FOC70_00280) - 58356..58883 (-) 528 WP_002836962.1 PcfB family protein -
  FOC70_RS00285 (FOC70_00285) - 59068..59241 (-) 174 WP_002840991.1 hypothetical protein -
  FOC70_RS00290 (FOC70_00290) mobQ 59315..60949 (-) 1635 WP_002840717.1 MobQ family relaxase -
  FOC70_RS00295 (FOC70_00295) - 61344..61634 (-) 291 WP_002840797.1 DUF3847 domain-containing protein -
  FOC70_RS00300 (FOC70_00300) - 61719..62213 (-) 495 WP_035137264.1 hypothetical protein -
  FOC70_RS00305 (FOC70_00305) - 62592..62981 (-) 390 WP_002841024.1 VOC family protein -
  FOC70_RS10170 - 63001..63226 (-) 226 Protein_64 CD1845 family protein -
  FOC70_RS00310 (FOC70_00310) rlmD 63262..64752 (-) 1491 WP_002841088.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  FOC70_RS00315 (FOC70_00315) rcrQ 64844..66640 (-) 1797 WP_002840943.1 ABC transporter ATP-binding protein Regulator
  FOC70_RS00320 (FOC70_00320) rcrP 66633..68393 (-) 1761 WP_080565297.1 ABC transporter ATP-binding protein Regulator
  FOC70_RS00325 (FOC70_00325) - 68368..68844 (-) 477 WP_002836890.1 MarR family transcriptional regulator -
  FOC70_RS00330 (FOC70_00330) thiC 69009..70310 (-) 1302 WP_002840882.1 phosphomethylpyrimidine synthase ThiC -
  FOC70_RS00335 (FOC70_00335) - 70491..71405 (-) 915 WP_002840694.1 cyclic pyranopterin monophosphate synthase MoaC/MOSC-domain-containing protein -
  FOC70_RS00340 (FOC70_00340) moaA 71407..72354 (-) 948 WP_002840966.1 GTP 3',8-cyclase MoaA -
  FOC70_RS00345 (FOC70_00345) - 72442..73617 (-) 1176 WP_002840888.1 hypothetical protein -
  FOC70_RS00350 (FOC70_00350) - 73633..73914 (-) 282 WP_002840795.1 hypothetical protein -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 66538.68 Da        Isoelectric Point: 5.3264

>NTDB_id=450043 FOC70_RS00320 WP_080565297.1 66633..68393(-) (rcrP) [Finegoldia magna strain FDAARGOS_764]
MIILIKIFRYLNKKQWIQILLSLVFIVTQVFLDLKIPDYMSKITMYVESPGHTVSDIIGEGKWMLLCAFGSLLSAIIVGY
LASKISASFSKNLRSRIFSKVESFSMKEINEFSTASLITRSTNDITQIQMVIVIGLQILIKAPIMAVWAIKKIYNKGFEW
TMATAVTVLILIVFVAILMVMVMPKFRMMQTLTDNINMILRENLTGLAVIRAYNSEDYREGKFDEANIDLTRTQLFTSRA
MSTLFPMINFSMSMLTLVIYFIGAGLINAAQMMDKYVLFSDMVVFSSYAMQVIMSFMMMSMIFIMVPRAEISAKRINEVL
DTELSIKDGNLDSSNEDYEYEIEFDDVSFKYTDSEQYILQNIDFKVKKGEKVAIIGSTGSGKSTILNLLLRFYDATEGVV
KIQGVDIKQYKLKFLYEKIAAVLQKSFLFKGDIKSNISFGDEDTDTKMVEEAADTSQSMEFIDKFGDKYDHEIAQLGKNV
SGGQKQRLSIARAIYRKPDIFLFDDSFSALDFKTDSELRHKLKENNPDSTTIVVAQRVGSIMDSDQIIVLENGQIAGIGK
HKDLLKNCEVYKEIAYSQLTEEELNA

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=450043 FOC70_RS00320 WP_080565297.1 66633..68393(-) (rcrP) [Finegoldia magna strain FDAARGOS_764]
ATGATAATTTTGATAAAAATATTTAGATATTTGAACAAAAAACAATGGATTCAAATTCTTTTGAGCTTGGTGTTTATCGT
AACACAAGTGTTTTTGGATTTGAAAATTCCGGATTATATGTCGAAAATTACGATGTATGTGGAAAGTCCGGGTCATACTG
TAAGTGATATTATTGGAGAGGGCAAATGGATGCTGTTGTGTGCATTTGGTTCTCTTTTATCAGCGATAATTGTAGGATAT
TTGGCATCGAAAATTTCGGCGTCATTTTCCAAAAATTTGAGGTCTAGAATATTTTCCAAGGTGGAAAGTTTCTCGATGAA
AGAAATCAACGAGTTTTCGACAGCAAGCTTGATAACTAGATCTACAAATGATATTACACAAATCCAAATGGTAATAGTTA
TAGGTTTACAAATTTTGATAAAAGCTCCGATAATGGCAGTGTGGGCTATCAAGAAAATCTACAACAAAGGATTTGAATGG
ACAATGGCAACTGCTGTGACTGTTTTGATTTTAATTGTATTCGTTGCAATACTGATGGTTATGGTTATGCCGAAATTCAG
AATGATGCAAACTTTAACCGACAACATCAACATGATTTTGCGTGAAAATTTGACGGGCCTTGCGGTTATCAGAGCGTACA
ACTCCGAAGATTATAGGGAAGGAAAGTTCGATGAAGCAAACATTGATTTGACAAGAACACAATTGTTCACAAGTCGTGCG
ATGTCGACGCTTTTTCCTATGATTAATTTCAGCATGTCGATGTTGACTCTTGTAATTTATTTTATCGGCGCGGGACTTAT
AAATGCGGCGCAAATGATGGACAAATACGTCTTGTTCTCGGACATGGTTGTTTTCAGTTCGTATGCAATGCAAGTTATCA
TGTCATTTATGATGATGAGCATGATTTTCATCATGGTTCCAAGAGCAGAAATTTCTGCCAAACGTATCAACGAGGTTTTG
GATACAGAACTTTCTATAAAAGATGGAAATCTTGATAGCTCAAATGAAGATTACGAATATGAAATTGAATTTGACGATGT
GTCTTTCAAATATACAGATTCTGAACAATATATCTTGCAAAATATTGATTTTAAAGTCAAAAAAGGAGAAAAAGTTGCCA
TCATAGGATCAACTGGATCTGGGAAAAGCACAATCTTGAATTTGCTTTTGAGATTTTACGATGCGACTGAAGGTGTCGTC
AAAATCCAAGGAGTAGATATCAAACAGTACAAGCTCAAATTCTTGTACGAAAAAATCGCAGCAGTGTTGCAAAAATCATT
TCTTTTCAAAGGGGATATTAAATCGAACATTTCTTTTGGAGATGAAGATACCGACACGAAAATGGTAGAAGAAGCAGCGG
ATACTTCGCAATCTATGGAATTTATAGATAAATTTGGCGACAAATACGACCATGAAATTGCACAATTAGGTAAGAATGTT
TCTGGTGGACAAAAACAAAGACTATCCATTGCAAGAGCGATTTACAGAAAACCTGATATATTCTTGTTTGACGATAGTTT
CTCGGCACTTGATTTCAAGACAGACAGTGAGCTTAGACATAAACTCAAAGAAAACAACCCTGATTCCACAACGATAGTTG
TCGCTCAAAGAGTGGGATCTATAATGGATTCTGATCAAATAATCGTACTTGAAAATGGTCAAATCGCAGGGATAGGTAAG
CACAAAGATTTATTGAAAAATTGTGAAGTGTACAAGGAAATAGCCTACTCGCAATTGACGGAGGAGGAATTAAATGCCTA
G

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(20-296)

ABC transporter (ABC_tran)

(359-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.49

100

0.493