Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   I5367_RS12735 Genome accession   NZ_CP065539
Coordinates   2623077..2623772 (-) Length   231 a.a.
NCBI ID   WP_007408165.1    Uniprot ID   A7Z793
Organism   Bacillus amyloliquefaciens strain DGL1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2618077..2628772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5367_RS12705 (I5367_12705) - 2618092..2618895 (-) 804 WP_007408168.1 M23 family metallopeptidase -
  I5367_RS12710 (I5367_12710) minD 2619023..2619826 (-) 804 WP_016938784.1 septum site-determining protein MinD -
  I5367_RS12715 (I5367_12715) minC 2619829..2620509 (-) 681 WP_012118104.1 septum site-determining protein MinC -
  I5367_RS12720 (I5367_12720) mreD 2620563..2621081 (-) 519 WP_007408167.1 rod shape-determining protein MreD -
  I5367_RS12725 (I5367_12725) mreC 2621078..2621941 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  I5367_RS12730 (I5367_12730) mreB 2621972..2622985 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  I5367_RS12735 (I5367_12735) ysxA/radC 2623077..2623772 (-) 696 WP_007408165.1 RadC family protein Machinery gene
  I5367_RS12740 (I5367_12740) - 2623804..2624373 (-) 570 WP_012118105.1 Maf family protein -
  I5367_RS12745 (I5367_12745) - 2624514..2625515 (-) 1002 WP_012118106.1 SPOR domain-containing protein -
  I5367_RS12750 (I5367_12750) comC 2625642..2626394 (-) 753 WP_012118107.1 prepilin peptidase Machinery gene
  I5367_RS12755 (I5367_12755) - 2626534..2627826 (-) 1293 WP_012118108.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26080.30 Da        Isoelectric Point: 9.1909

>NTDB_id=450027 I5367_RS12735 WP_007408165.1 2623077..2623772(-) (ysxA/radC) [Bacillus amyloliquefaciens strain DGL1]
MIIRDLPLKLRDFPEKEKPRERLLHFGAEHLSNNELLAILLRTGTKHESVMNLAHRLLRTFDGLRLLKGASAQELSSIPG
IGTVKAVQILAAIELGSRIHKTSAGEHCVIRSPEDGAKYVMEDMRFLSQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=450027 I5367_RS12735 WP_007408165.1 2623077..2623772(-) (ysxA/radC) [Bacillus amyloliquefaciens strain DGL1]
TTGATCATCCGTGATCTGCCGTTAAAATTAAGAGATTTCCCCGAAAAAGAAAAACCGAGAGAGCGGCTTCTGCACTTCGG
AGCCGAACATCTCTCTAACAATGAATTGCTCGCCATCCTGCTGCGGACGGGAACGAAACATGAGTCCGTCATGAACCTCG
CTCACCGGCTGCTGCGGACGTTTGACGGGCTGCGACTGTTAAAAGGCGCCTCTGCCCAGGAGCTTTCCAGCATTCCGGGA
ATCGGCACGGTGAAAGCCGTTCAGATTCTTGCCGCAATTGAGCTGGGGAGCCGCATTCATAAGACATCCGCCGGGGAGCA
TTGCGTCATCCGCTCTCCGGAAGACGGGGCGAAGTATGTGATGGAGGATATGCGCTTTTTATCCCAGGAGCATTTTGTCT
GTTTATATTTAAATACCAAAAATCAAGTCATTCATAAACGCACCGTTTTTATCGGAAGTCTGAATTCATCTATTGTCCAC
CCGCGGGAGGTGTTTAAAGAAGCTTTCAAACGATCCGCCGCGTCCTTCATTTGTGTTCACAATCATCCTTCAGGAGATCC
TACACCGAGCAGGGAAGATATAGAGGTAACCAGGCGGCTTTTTGAGTGCGGAAATTTAATCGGCATCGAGCTGCTGGATC
ATTTGGTCATTGGTGACAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(11-87)

RadC-like JAB domain (RadC)

(110-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z793

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

87.879

100

0.879
  radC Streptococcus pneumoniae TIGR4

49.524

90.909

0.45
  radC Streptococcus pneumoniae R6

49.048

90.909

0.446
  radC Streptococcus pneumoniae D39

49.048

90.909

0.446
  radC Streptococcus gordonii str. Challis substr. CH1

47.143

90.909

0.429