Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   FOC71_RS08195 Genome accession   NZ_CP053999
Coordinates   1616696..1617541 (-) Length   281 a.a.
NCBI ID   WP_003072166.1    Uniprot ID   A0AAD2SW28
Organism   Streptococcus intermedius strain FDAARGOS_769     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1611696..1622541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC71_RS08185 (FOC71_08185) - 1612878..1614647 (-) 1770 WP_003072169.1 ABC transporter ATP-binding protein -
  FOC71_RS08190 (FOC71_08190) - 1614657..1616393 (-) 1737 WP_003072167.1 ABC transporter ATP-binding protein -
  FOC71_RS08195 (FOC71_08195) endA 1616696..1617541 (-) 846 WP_003072166.1 DNA/RNA non-specific endonuclease Machinery gene
  FOC71_RS08200 (FOC71_08200) - 1617604..1617780 (-) 177 WP_003072163.1 DNA-directed RNA polymerase subunit beta -
  FOC71_RS08205 (FOC71_08205) murA 1617773..1619053 (-) 1281 WP_003072160.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  FOC71_RS08210 (FOC71_08210) - 1619091..1619321 (-) 231 WP_080564719.1 DUF1146 family protein -
  FOC71_RS08215 (FOC71_08215) - 1619423..1619842 (-) 420 WP_003072157.1 F0F1 ATP synthase subunit epsilon -
  FOC71_RS08220 (FOC71_08220) atpD 1619853..1621259 (-) 1407 WP_003072155.1 F0F1 ATP synthase subunit beta -
  FOC71_RS08225 (FOC71_08225) - 1621294..1622172 (-) 879 WP_003069751.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 30714.35 Da        Isoelectric Point: 10.3160

>NTDB_id=450027 FOC71_RS08195 WP_003072166.1 1616696..1617541(-) (endA) [Streptococcus intermedius strain FDAARGOS_769]
MSQRKSNQKVMQSVIGGIIALSLALGAYYFRANNNGTVHQDSSAINKSLEQHHAGPSKDLAQSVLTGNVRSQFKGKIEWN
GAGAFIVNENKNDLDAKVGSIPYADNKTKLVRGRTVPTVANALLSKATRQYRNREETGNGSTTWTPAGWHQVKHLSGEYH
HAVDRGHLLGYALIGNLKGFDASTSNPKNIAVQTAWANQANASHSTGQNFYETKVRKALDKNKRVRYRVTLIYASEQDLV
PVGSHIEAKSSDGSLEINVFVPNVQTGIRLNYQTGEVTVTN

Nucleotide


Download         Length: 846 bp        

>NTDB_id=450027 FOC71_RS08195 WP_003072166.1 1616696..1617541(-) (endA) [Streptococcus intermedius strain FDAARGOS_769]
ATGTCGCAGAGAAAATCCAATCAAAAAGTAATGCAGAGTGTTATTGGAGGAATTATTGCACTTAGTTTAGCTCTTGGTGC
TTATTATTTTCGAGCAAATAATAATGGTACAGTTCATCAAGATAGTTCTGCCATTAACAAAAGTCTCGAGCAACATCATG
CGGGTCCTAGTAAAGATCTGGCTCAGAGTGTGTTGACAGGTAATGTGCGTTCACAATTTAAAGGGAAAATCGAGTGGAAT
GGCGCAGGAGCTTTTATTGTCAATGAGAATAAAAATGATTTAGATGCTAAAGTGGGAAGTATTCCTTATGCGGATAATAA
GACAAAATTGGTCAGAGGTCGAACTGTTCCGACGGTAGCAAATGCTCTTTTGTCCAAAGCTACTCGTCAGTATAGGAATC
GTGAAGAAACAGGTAATGGTTCAACAACTTGGACACCTGCTGGCTGGCATCAAGTGAAGCATTTATCGGGTGAATATCAT
CATGCAGTTGACCGTGGACATCTGCTAGGCTATGCCTTGATTGGTAACTTGAAAGGCTTTGATGCTTCGACTAGTAATCC
CAAAAATATTGCGGTGCAAACGGCTTGGGCGAATCAAGCAAATGCTAGCCATTCTACAGGTCAAAATTTTTATGAAACGA
AAGTACGTAAAGCTCTTGATAAAAATAAACGAGTTCGGTATCGAGTGACCTTGATTTACGCAAGTGAGCAGGATTTAGTA
CCAGTTGGTTCACATATTGAAGCCAAGTCTAGCGACGGTAGTTTGGAAATAAATGTCTTTGTGCCAAACGTACAGACAGG
AATTCGATTAAATTATCAGACAGGAGAAGTGACGGTCACCAACTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(112-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

68.613

97.509

0.669
  endA Streptococcus pneumoniae D39

68.613

97.509

0.669
  endA Streptococcus pneumoniae R6

68.613

97.509

0.669
  endA Streptococcus pneumoniae TIGR4

68.613

97.509

0.669