Detailed information    

insolico Bioinformatically predicted

Overview


Name   endA   Type   Machinery gene
Locus tag   FOC73_RS00185 Genome accession   NZ_CP053998
Coordinates   42018..42899 (+) Length   293 a.a.
NCBI ID   WP_002883495.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_771     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 37018..47899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC73_RS00160 (FOC73_00160) - 37550..38971 (+) 1422 WP_002883514.1 DUF4832 domain-containing protein -
  FOC73_RS00165 (FOC73_00165) galE 38986..39999 (+) 1014 WP_002883504.1 UDP-glucose 4-epimerase GalE -
  FOC73_RS00170 (FOC73_00170) - 40191..40427 (+) 237 WP_037603973.1 DUF1146 family protein -
  FOC73_RS00175 (FOC73_00175) murA 40495..41766 (+) 1272 WP_002883499.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  FOC73_RS00180 (FOC73_00180) - 41768..41956 (+) 189 WP_002883487.1 DNA-directed RNA polymerase subunit beta -
  FOC73_RS00185 (FOC73_00185) endA 42018..42899 (+) 882 WP_002883495.1 DNA/RNA non-specific endonuclease Machinery gene
  FOC73_RS00190 (FOC73_00190) - 42977..43627 (-) 651 WP_002886253.1 amino acid ABC transporter permease -
  FOC73_RS00195 (FOC73_00195) - 43639..44337 (-) 699 WP_002886251.1 amino acid ABC transporter permease -
  FOC73_RS00200 (FOC73_00200) - 44355..45188 (-) 834 WP_021146932.1 transporter substrate-binding domain-containing protein -
  FOC73_RS00205 (FOC73_00205) - 45200..45967 (-) 768 WP_002884172.1 amino acid ABC transporter ATP-binding protein -
  FOC73_RS00210 (FOC73_00210) - 46155..46805 (-) 651 WP_002886253.1 amino acid ABC transporter permease -
  FOC73_RS00215 (FOC73_00215) - 46817..47515 (-) 699 WP_002886251.1 amino acid ABC transporter permease -

Sequence


Protein


Download         Length: 293 a.a.        Molecular weight: 31589.29 Da        Isoelectric Point: 10.2851

>NTDB_id=449912 FOC73_RS00185 WP_002883495.1 42018..42899(+) (endA) [Streptococcus salivarius strain FDAARGOS_771]
MAKRKTSLTNKQKRQLVSLLIAVLIAVLGYIGTSNKLSPNNPIKQVASLVSGKSNNSVKSNGSTSGQSTPQEQLAEMVMT
SSVKSQLGNAIEWNGAGAYIVNGNKTNLNAKVSSQPYANNQVKRVQGQTVPTVANALLSKATRQYKNRQETGNGSTSWTP
AGWHQVHNLSGEYSHAVDRGHLLGYALVGGLKGFDASTSNPENIAVQTAWANQANSETSTGQNYYESLVRKAQDKNKRVR
YRVTLIYEGDNLIPSGSHLEAKSADGSLEFNVFVPNVQQGITLDYYSGKVTVN

Nucleotide


Download         Length: 882 bp        

>NTDB_id=449912 FOC73_RS00185 WP_002883495.1 42018..42899(+) (endA) [Streptococcus salivarius strain FDAARGOS_771]
ATGGCAAAAAGAAAGACATCTTTAACAAATAAACAGAAACGTCAGCTAGTCTCGTTACTAATAGCGGTTTTGATTGCAGT
TTTAGGTTACATTGGAACGAGCAATAAGCTCTCACCTAACAATCCAATCAAGCAGGTAGCTAGTCTAGTCTCGGGAAAAT
CCAATAACTCCGTGAAATCAAATGGCTCAACAAGTGGGCAGTCTACGCCACAAGAGCAGCTCGCAGAGATGGTGATGACC
AGCTCTGTCAAGAGTCAACTAGGAAACGCCATAGAATGGAATGGTGCTGGTGCCTATATTGTTAACGGTAATAAGACCAA
TCTTAATGCTAAGGTATCTAGCCAACCCTATGCTAATAACCAAGTTAAAAGGGTTCAAGGACAAACCGTTCCTACAGTTG
CGAATGCCTTGTTAAGTAAAGCGACTAGACAGTACAAAAATCGTCAAGAAACAGGGAATGGCTCAACATCTTGGACACCA
GCTGGATGGCATCAAGTTCACAATCTTTCAGGAGAGTATAGCCATGCCGTAGACCGAGGCCATTTGTTAGGTTATGCACT
TGTAGGTGGTCTCAAAGGATTTGATGCCTCGACTTCAAACCCAGAAAATATTGCCGTTCAAACTGCTTGGGCTAACCAAG
CTAATAGCGAAACTTCCACAGGCCAAAACTATTATGAAAGCCTGGTACGTAAAGCTCAGGATAAAAATAAACGTGTCCGT
TATCGCGTTACCCTAATTTATGAAGGAGATAACCTGATTCCATCAGGATCACATCTTGAAGCCAAGTCAGCAGATGGCTC
GCTTGAGTTCAATGTCTTCGTTCCAAATGTCCAACAGGGAATTACCCTAGATTATTATTCAGGCAAAGTAACGGTGAATT
AA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

69.96

86.348

0.604

  endA Streptococcus pneumoniae D39

69.96

86.348

0.604

  endA Streptococcus pneumoniae R6

69.96

86.348

0.604

  endA Streptococcus pneumoniae TIGR4

69.96

86.348

0.604