Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | FOC74_RS26560 | Genome accession | NZ_CP053997 |
| Coordinates | 4738603..4739382 (+) | Length | 259 a.a. |
| NCBI ID | WP_000421288.1 | Uniprot ID | Q81WK7 |
| Organism | Bacillus cereus strain FDAARGOS_780 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 4699779..4773704 | 4738603..4739382 | within | 0 |
Gene organization within MGE regions
Location: 4699779..4773704
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOC74_RS26370 (FOC74_26370) | rsmB | 4699937..4701271 (+) | 1335 | WP_001249652.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
| FOC74_RS26375 (FOC74_26375) | rlmN | 4701276..4702364 (+) | 1089 | WP_000450543.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| FOC74_RS26380 (FOC74_26380) | - | 4702369..4703121 (+) | 753 | WP_000648699.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| FOC74_RS26385 (FOC74_26385) | prkC | 4703130..4705103 (+) | 1974 | WP_000904759.1 | serine/threonine protein kinase PrkC | - |
| FOC74_RS26390 (FOC74_26390) | rsgA | 4705372..4706253 (+) | 882 | WP_001113935.1 | ribosome small subunit-dependent GTPase A | - |
| FOC74_RS26395 (FOC74_26395) | rpe | 4706256..4706900 (+) | 645 | WP_000589966.1 | ribulose-phosphate 3-epimerase | - |
| FOC74_RS26400 (FOC74_26400) | - | 4707000..4707680 (+) | 681 | WP_033688055.1 | thiamine diphosphokinase | - |
| FOC74_RS26405 (FOC74_26405) | spoVM | 4707747..4707827 (+) | 81 | WP_001213599.1 | stage V sporulation protein SpoVM | - |
| FOC74_RS26410 (FOC74_26410) | rpmB | 4707901..4708089 (-) | 189 | WP_000124776.1 | 50S ribosomal protein L28 | - |
| FOC74_RS26415 (FOC74_26415) | - | 4708468..4708830 (+) | 363 | WP_000021109.1 | Asp23/Gls24 family envelope stress response protein | - |
| FOC74_RS26420 (FOC74_26420) | - | 4708853..4710529 (+) | 1677 | WP_000027136.1 | DAK2 domain-containing protein | - |
| FOC74_RS26425 (FOC74_26425) | recG | 4710819..4712867 (+) | 2049 | WP_001006884.1 | ATP-dependent DNA helicase RecG | - |
| FOC74_RS26430 (FOC74_26430) | fapR | 4712956..4713549 (+) | 594 | WP_000747352.1 | transcription factor FapR | - |
| FOC74_RS26435 (FOC74_26435) | plsX | 4713546..4714538 (+) | 993 | WP_000684108.1 | phosphate acyltransferase PlsX | - |
| FOC74_RS26440 (FOC74_26440) | fabD | 4714553..4715497 (+) | 945 | WP_000516948.1 | ACP S-malonyltransferase | - |
| FOC74_RS26445 (FOC74_26445) | fabG | 4715497..4716237 (+) | 741 | WP_000911782.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| FOC74_RS26450 (FOC74_26450) | acpP | 4716307..4716540 (+) | 234 | WP_000786062.1 | acyl carrier protein | - |
| FOC74_RS26455 (FOC74_26455) | rncS | 4716599..4717336 (+) | 738 | WP_001146873.1 | ribonuclease III | - |
| FOC74_RS26460 (FOC74_26460) | smc | 4717483..4721052 (+) | 3570 | WP_000478986.1 | chromosome segregation protein SMC | - |
| FOC74_RS26465 (FOC74_26465) | ftsY | 4721068..4722057 (+) | 990 | WP_000007651.1 | signal recognition particle-docking protein FtsY | - |
| FOC74_RS26470 (FOC74_26470) | - | 4722191..4722523 (+) | 333 | WP_000891062.1 | putative DNA-binding protein | - |
| FOC74_RS26475 (FOC74_26475) | ffh | 4722536..4723885 (+) | 1350 | WP_000863461.1 | signal recognition particle protein | - |
| FOC74_RS26480 (FOC74_26480) | rpsP | 4723986..4724258 (+) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| FOC74_RS26485 (FOC74_26485) | - | 4724273..4724500 (+) | 228 | WP_000737398.1 | KH domain-containing protein | - |
| FOC74_RS26490 (FOC74_26490) | rimM | 4724621..4725136 (+) | 516 | WP_000170268.1 | ribosome maturation factor RimM | - |
| FOC74_RS26495 (FOC74_26495) | trmD | 4725136..4725870 (+) | 735 | WP_000686892.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| FOC74_RS26500 (FOC74_26500) | rplS | 4726017..4726361 (+) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| FOC74_RS26505 (FOC74_26505) | lepB | 4726463..4727014 (+) | 552 | WP_000711857.1 | signal peptidase I | - |
| FOC74_RS26510 (FOC74_26510) | ylqF | 4727035..4727925 (+) | 891 | WP_000236696.1 | ribosome biogenesis GTPase YlqF | - |
| FOC74_RS26515 (FOC74_26515) | rnhB | 4727977..4728750 (+) | 774 | WP_001174714.1 | ribonuclease HII | - |
| FOC74_RS26520 (FOC74_26520) | sucC | 4728944..4730104 (+) | 1161 | WP_001020785.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| FOC74_RS26525 (FOC74_26525) | sucD | 4730124..4731026 (+) | 903 | WP_000115178.1 | succinate--CoA ligase subunit alpha | - |
| FOC74_RS26530 (FOC74_26530) | dprA | 4731114..4731983 (+) | 870 | WP_000818033.1 | DNA-processing protein DprA | - |
| FOC74_RS26535 (FOC74_26535) | topA | 4732128..4734206 (+) | 2079 | WP_001286969.1 | type I DNA topoisomerase | - |
| FOC74_RS26540 (FOC74_26540) | trmFO | 4734257..4735561 (+) | 1305 | WP_001991958.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| FOC74_RS26545 (FOC74_26545) | xerC | 4735627..4736526 (+) | 900 | WP_001101227.1 | tyrosine recombinase XerC | - |
| FOC74_RS26550 (FOC74_26550) | hslV | 4736569..4737111 (+) | 543 | WP_000526272.1 | ATP-dependent protease proteolytic subunit HslV | - |
| FOC74_RS26555 (FOC74_26555) | hslU | 4737134..4738525 (+) | 1392 | WP_000550088.1 | ATP-dependent protease ATPase subunit HslU | - |
| FOC74_RS26560 (FOC74_26560) | codY | 4738603..4739382 (+) | 780 | WP_000421288.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| FOC74_RS26565 (FOC74_26565) | rpsB | 4739733..4740434 (+) | 702 | WP_000111483.1 | 30S ribosomal protein S2 | - |
| FOC74_RS26570 (FOC74_26570) | tsf | 4740538..4741425 (+) | 888 | WP_001018581.1 | translation elongation factor Ts | - |
| FOC74_RS26575 (FOC74_26575) | pyrH | 4741492..4742214 (+) | 723 | WP_000042663.1 | UMP kinase | - |
| FOC74_RS26580 (FOC74_26580) | frr | 4742217..4742774 (+) | 558 | WP_000531503.1 | ribosome recycling factor | - |
| FOC74_RS26585 (FOC74_26585) | uppS | 4742860..4743636 (+) | 777 | WP_000971301.1 | isoprenyl transferase | - |
| FOC74_RS26590 (FOC74_26590) | cdsA | 4743654..4744445 (+) | 792 | WP_000813581.1 | phosphatidate cytidylyltransferase | - |
| FOC74_RS26595 (FOC74_26595) | dxr | 4744469..4745611 (+) | 1143 | WP_000790359.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| FOC74_RS26600 (FOC74_26600) | rseP | 4745628..4746884 (+) | 1257 | WP_001090229.1 | RIP metalloprotease RseP | - |
| FOC74_RS26605 (FOC74_26605) | - | 4746994..4748694 (+) | 1701 | WP_000814312.1 | proline--tRNA ligase | - |
| FOC74_RS26610 (FOC74_26610) | - | 4748819..4753120 (+) | 4302 | WP_000059985.1 | PolC-type DNA polymerase III | - |
| FOC74_RS26615 (FOC74_26615) | rimP | 4753453..4753923 (+) | 471 | WP_000359097.1 | ribosome maturation factor RimP | - |
| FOC74_RS26620 (FOC74_26620) | nusA | 4753941..4755047 (+) | 1107 | WP_000102609.1 | transcription termination factor NusA | - |
| FOC74_RS26625 (FOC74_26625) | - | 4755059..4755331 (+) | 273 | WP_000071128.1 | YlxR family protein | - |
| FOC74_RS26630 (FOC74_26630) | - | 4755332..4755643 (+) | 312 | WP_001286523.1 | YlxQ family RNA-binding protein | - |
| FOC74_RS26635 (FOC74_26635) | infB | 4755648..4757708 (+) | 2061 | WP_000036341.1 | translation initiation factor IF-2 | - |
| FOC74_RS26640 (FOC74_26640) | - | 4757705..4757986 (+) | 282 | WP_000582364.1 | DUF503 domain-containing protein | - |
| FOC74_RS26645 (FOC74_26645) | rbfA | 4758002..4758358 (+) | 357 | WP_000776441.1 | 30S ribosome-binding factor RbfA | - |
| FOC74_RS26650 (FOC74_26650) | truB | 4758445..4759368 (+) | 924 | WP_000399337.1 | tRNA pseudouridine(55) synthase TruB | - |
| FOC74_RS26655 (FOC74_26655) | ribF | 4759412..4760383 (+) | 972 | WP_000766711.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| FOC74_RS26660 (FOC74_26660) | rpsO | 4760484..4760753 (+) | 270 | WP_001229392.1 | 30S ribosomal protein S15 | - |
| FOC74_RS26665 (FOC74_26665) | pnp | 4760914..4763052 (+) | 2139 | WP_000076750.1 | polyribonucleotide nucleotidyltransferase | - |
| FOC74_RS26670 (FOC74_26670) | - | 4763204..4764103 (+) | 900 | WP_000647529.1 | polysaccharide deacetylase family protein | - |
| FOC74_RS26675 (FOC74_26675) | - | 4764190..4765431 (+) | 1242 | WP_000592985.1 | pitrilysin family protein | - |
| FOC74_RS26680 (FOC74_26680) | - | 4765558..4765809 (+) | 252 | WP_001239752.1 | YlmC/YmxH family sporulation protein | - |
| FOC74_RS26685 (FOC74_26685) | dpaA | 4766084..4766986 (+) | 903 | WP_000954728.1 | dipicolinic acid synthetase subunit A | - |
| FOC74_RS26690 (FOC74_26690) | dpaB | 4766983..4767582 (+) | 600 | WP_001049484.1 | dipicolinate synthase subunit B | - |
| FOC74_RS26695 (FOC74_26695) | asd | 4767733..4768779 (+) | 1047 | WP_000414849.1 | aspartate-semialdehyde dehydrogenase | - |
| FOC74_RS26700 (FOC74_26700) | dapG | 4768803..4770035 (+) | 1233 | WP_000692470.1 | aspartate kinase | - |
| FOC74_RS26705 (FOC74_26705) | dapA | 4770047..4770925 (+) | 879 | WP_000564761.1 | 4-hydroxy-tetrahydrodipicolinate synthase | - |
| FOC74_RS26710 (FOC74_26710) | - | 4771691..4773361 (+) | 1671 | WP_000823085.1 | ribonuclease J | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28774.05 Da Isoelectric Point: 4.7947
>NTDB_id=449910 FOC74_RS26560 WP_000421288.1 4738603..4739382(+) (codY) [Bacillus cereus strain FDAARGOS_780]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=449910 FOC74_RS26560 WP_000421288.1 4738603..4739382(+) (codY) [Bacillus cereus strain FDAARGOS_780]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.081 |
100 |
0.811 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.667 |
98.456 |
0.459 |