Detailed information
Bioinformatically predicted
Overview
| Name | rarA | Type | Machinery gene |
| Locus tag | STCNRZ1202_RS09015 | Genome accession | NZ_CP065506 |
| Coordinates | 1729534..1730802 (-) | Length | 422 a.a. |
| NCBI ID | WP_002952183.1 | Uniprot ID | Q5M295 |
| Organism | Streptococcus thermophilus strain CNRZ1202 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1724534..1735802
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| STCNRZ1202_RS08980 (STCNRZ1202_09000) | - | 1724855..1726396 (+) | 1542 | WP_232977244.1 | ABC transporter ATP-binding protein | - |
| STCNRZ1202_RS08985 | - | 1726529..1726744 (+) | 216 | WP_041827116.1 | hypothetical protein | - |
| STCNRZ1202_RS08990 (STCNRZ1202_09005) | - | 1726774..1727751 (+) | 978 | WP_011226670.1 | replication initiation protein | - |
| STCNRZ1202_RS08995 (STCNRZ1202_09010) | - | 1727763..1727951 (+) | 189 | WP_000369785.1 | DUF3173 domain-containing protein | - |
| STCNRZ1202_RS09000 (STCNRZ1202_09015) | - | 1727953..1729092 (+) | 1140 | WP_347229632.1 | site-specific integrase | - |
| STCNRZ1202_RS09015 (STCNRZ1202_09030) | rarA | 1729534..1730802 (-) | 1269 | WP_002952183.1 | replication-associated recombination protein A | Machinery gene |
| STCNRZ1202_RS09020 (STCNRZ1202_09035) | rpmB | 1730972..1731160 (+) | 189 | WP_002952184.1 | 50S ribosomal protein L28 | - |
| STCNRZ1202_RS09025 (STCNRZ1202_09040) | - | 1731287..1731553 (+) | 267 | WP_002952186.1 | IreB family regulatory phosphoprotein | - |
| STCNRZ1202_RS09030 (STCNRZ1202_09045) | ruvX | 1731553..1731972 (+) | 420 | WP_002952187.1 | Holliday junction resolvase RuvX | - |
| STCNRZ1202_RS09035 (STCNRZ1202_09050) | - | 1732081..1732386 (+) | 306 | WP_002952188.1 | DUF1292 domain-containing protein | - |
| STCNRZ1202_RS09040 (STCNRZ1202_09055) | - | 1732599..1734245 (+) | 1647 | WP_096811708.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 422 a.a. Molecular weight: 46419.92 Da Isoelectric Point: 6.8977
>NTDB_id=449831 STCNRZ1202_RS09015 WP_002952183.1 1729534..1730802(-) (rarA) [Streptococcus thermophilus strain CNRZ1202]
MPDNLALRMRPRSISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
NVLGDKERGFAFEVHLDDDALDFIATATNGDLRSAYNSLDLAVMSTPASGNGQHHITLDIVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYKAMDAALADLRKSGNLPIPRHLRDGHYAGSKALGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR
MPDNLALRMRPRSISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
NVLGDKERGFAFEVHLDDDALDFIATATNGDLRSAYNSLDLAVMSTPASGNGQHHITLDIVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYKAMDAALADLRKSGNLPIPRHLRDGHYAGSKALGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR
Nucleotide
Download Length: 1269 bp
>NTDB_id=449831 STCNRZ1202_RS09015 WP_002952183.1 1729534..1730802(-) (rarA) [Streptococcus thermophilus strain CNRZ1202]
ATGCCAGATAATCTTGCTTTACGCATGCGTCCACGTTCAATTTCAGAGGTGATTGGTCAGAAGCATTTAGTTGGTGAAGG
TAAAATTATTCGCCGTATGGTAGAGGCGAATATGCTGTCGTCAATGATTCTCTACGGACCTCCAGGAATCGGGAAAACCT
CGATAGCCAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACTTTTAATGCCACTGTCGATAGCAAAAAACGTCTA
CAGGAAATTGCAGAAGAGGCTAAATTTTCAGGTGGTTTAGTTCTACTTTTAGATGAGATCCATCGTTTGGATAAAGCGAA
ACAAGATTTTTTGTTACCATTATTAGAGAACGGAAATATTATCATGATTGGTGCCACAACCGAGAATCCATTTTTTTCTG
TGACACCAGCCATCCGTAGCCGTGTACAAATATTTGAGTTGGAACCACTCTCTAATGAAGATATCAAGGAAGCTATTTTG
AATGTTCTAGGGGACAAGGAGCGTGGCTTCGCCTTTGAGGTTCACTTAGATGATGATGCTCTAGATTTTATTGCGACAGC
TACTAATGGTGATTTACGATCGGCATATAATTCTTTGGATCTGGCTGTCATGTCGACACCAGCTTCAGGAAATGGGCAGC
ATCATATTACTTTAGACATAGTTGAAAATAGCTTACAACGCAGTTATATTACTATGGATAAAGACGGTGATGGGCACTAT
GATGTCCTTTCTGCCTTGCAAAAATCTATTCGAGGATCTGATGTTAATGCCAGTCTTCACTATGCGGCACGTTTGGTTGA
GGCAGGGGATTTGCCTAGTCTAGCACGTCGCTTGACTGTGATTGCCTATGAGGATATTGGTTTAGCTAATCCAGATGCAC
AAGTTCACACGGTCACAGCCTTGGAAGCTGCACAGAAAATAGGTTTTCCGGAGGCACGTATTTTGATTGCCAACGTAGTT
ATTGACTTAGCATTATCACCTAAGTCGAATTCGGCTTATAAGGCAATGGATGCTGCCCTGGCGGATCTTAGAAAGTCTGG
GAATTTACCTATTCCACGTCATCTGAGAGATGGACACTATGCTGGAAGTAAGGCACTGGGTAATGCACAAGATTATAAGT
ATCCACATGCCTATCCTGAAAAGTGGGTTAAGCAACAATACCTTCCAGATAAATTAAGAGGAGTCAATTATTTCCAACCT
AATGAAACTGGGAAATACGAAAGAGCTCTTGGAGCTAATAAAGAACGAATCGATAAGTTATCTAGATAA
ATGCCAGATAATCTTGCTTTACGCATGCGTCCACGTTCAATTTCAGAGGTGATTGGTCAGAAGCATTTAGTTGGTGAAGG
TAAAATTATTCGCCGTATGGTAGAGGCGAATATGCTGTCGTCAATGATTCTCTACGGACCTCCAGGAATCGGGAAAACCT
CGATAGCCAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACTTTTAATGCCACTGTCGATAGCAAAAAACGTCTA
CAGGAAATTGCAGAAGAGGCTAAATTTTCAGGTGGTTTAGTTCTACTTTTAGATGAGATCCATCGTTTGGATAAAGCGAA
ACAAGATTTTTTGTTACCATTATTAGAGAACGGAAATATTATCATGATTGGTGCCACAACCGAGAATCCATTTTTTTCTG
TGACACCAGCCATCCGTAGCCGTGTACAAATATTTGAGTTGGAACCACTCTCTAATGAAGATATCAAGGAAGCTATTTTG
AATGTTCTAGGGGACAAGGAGCGTGGCTTCGCCTTTGAGGTTCACTTAGATGATGATGCTCTAGATTTTATTGCGACAGC
TACTAATGGTGATTTACGATCGGCATATAATTCTTTGGATCTGGCTGTCATGTCGACACCAGCTTCAGGAAATGGGCAGC
ATCATATTACTTTAGACATAGTTGAAAATAGCTTACAACGCAGTTATATTACTATGGATAAAGACGGTGATGGGCACTAT
GATGTCCTTTCTGCCTTGCAAAAATCTATTCGAGGATCTGATGTTAATGCCAGTCTTCACTATGCGGCACGTTTGGTTGA
GGCAGGGGATTTGCCTAGTCTAGCACGTCGCTTGACTGTGATTGCCTATGAGGATATTGGTTTAGCTAATCCAGATGCAC
AAGTTCACACGGTCACAGCCTTGGAAGCTGCACAGAAAATAGGTTTTCCGGAGGCACGTATTTTGATTGCCAACGTAGTT
ATTGACTTAGCATTATCACCTAAGTCGAATTCGGCTTATAAGGCAATGGATGCTGCCCTGGCGGATCTTAGAAAGTCTGG
GAATTTACCTATTCCACGTCATCTGAGAGATGGACACTATGCTGGAAGTAAGGCACTGGGTAATGCACAAGATTATAAGT
ATCCACATGCCTATCCTGAAAAGTGGGTTAAGCAACAATACCTTCCAGATAAATTAAGAGGAGTCAATTATTTCCAACCT
AATGAAACTGGGAAATACGAAAGAGCTCTTGGAGCTAATAAAGAACGAATCGATAAGTTATCTAGATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rarA | Bacillus subtilis subsp. subtilis str. 168 |
59.666 |
99.289 |
0.592 |