Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   FOC77_RS17985 Genome accession   NZ_CP053989
Coordinates   3585100..3587526 (-) Length   808 a.a.
NCBI ID   WP_061800776.1    Uniprot ID   -
Organism   Niallia circulans strain FDAARGOS_783     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3580100..3592526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC77_RS17970 (FOC77_17970) - 3583065..3584144 (-) 1080 WP_047944336.1 AI-2E family transporter -
  FOC77_RS17975 (FOC77_17975) - 3584431..3584562 (-) 132 WP_082810098.1 YrzQ family protein -
  FOC77_RS17980 (FOC77_17980) - 3584617..3584805 (-) 189 WP_047944344.1 hypothetical protein -
  FOC77_RS17985 (FOC77_17985) recD2 3585100..3587526 (-) 2427 WP_061800776.1 ATP-dependent RecD-like DNA helicase Machinery gene
  FOC77_RS17990 (FOC77_17990) - 3587570..3588220 (-) 651 WP_061800778.1 tetratricopeptide repeat protein -
  FOC77_RS17995 (FOC77_17995) mnmA 3588378..3589493 (-) 1116 WP_061800780.1 tRNA 2-thiouridine(34) synthase MnmA -
  FOC77_RS18000 (FOC77_18000) - 3589541..3590683 (-) 1143 WP_047944331.1 cysteine desulfurase family protein -
  FOC77_RS18005 (FOC77_18005) - 3590827..3591246 (-) 420 WP_047944330.1 Rrf2 family transcriptional regulator -
  FOC77_RS18010 (FOC77_18010) - 3591246..3591929 (-) 684 WP_047944329.1 YitT family protein -

Sequence

Protein


Download         Length: 808 a.a.        Molecular weight: 91174.18 Da        Isoelectric Point: 4.6838

>NTDB_id=449801 FOC77_RS17985 WP_061800776.1 3585100..3587526(-) (recD2) [Niallia circulans strain FDAARGOS_783]
MNEQNSLDLFENEKKYVKGRHLVTIFHNEQNLYSVIRIRVDETNHDYDDKEAVITGYLPKMNEEETYTYFGDFKEHPRFG
LQLQATSFRKEMPQTKQGVIAYLSSNLFKGIGEKTAENIVDTLGEEAISKIMNQPSILETVPKLASDKAKILYDTLMKNQ
GLEQAMVSLNQYGFGPQLSMKIYQVYKENTLEIVQTNPYKLVEDIEGIGFGKADDLGSQIGITGNHPDRLKAGCLYILEL
SSNQEGHVYLHAEFLLEKVKALLEENQKEEIEFSQIADQVIQLEEEGKIIVEDKKIYLPSLFFSEKGLVRNIKRVMEQSE
YKDQFPESEFLLALGNLEDRIGVQYAPSQREAIQTALMSPMLILTGGPGTGKTTVIKGIVELYGELHGCSLDPNDYKNDE
PYPFILAAPTGRAAKRMAESTGLPAVTIHRLLGWNGTGTFERDEDHPLEGKILIVDETSMVDIWLAHQLFKALPEHIQVI
IVGDEDQLPSVGPGQVLKDLLDSACIPTVKLKDIYRQAEGSSIIELAHEMKKGQLPANLLVPQGDRSFIKCSSSQIPQAI
EKIVLNAKNKGFAPMDIQVLAPMYRGPAGIDRLNAILQEILNPNPDGTRKELKFGEVTYRIGDKVLQLVNQPESNVFNGD
MGEIVSIFYAKENTEKQDMVIVSFDGIEATYTRQDLNQITLAYCCSVHKSQGSEFPIVIMPVVKSYYRMLRRNLIYTGIT
RSKQFLILCGELEAMELGVSRNDELNRQTTLKEKIKEAFADVYQPDETMEMTKEKSFDLLYEGKINQIDPMIGMENITPY
DFMEASES

Nucleotide


Download         Length: 2427 bp        

>NTDB_id=449801 FOC77_RS17985 WP_061800776.1 3585100..3587526(-) (recD2) [Niallia circulans strain FDAARGOS_783]
TTGAACGAGCAGAACTCTTTGGATCTTTTTGAAAATGAAAAAAAGTATGTAAAGGGACGGCATCTTGTTACCATTTTTCA
CAATGAACAGAATCTTTACTCCGTGATAAGAATACGAGTTGATGAAACGAATCATGATTATGACGATAAAGAAGCGGTAA
TTACTGGCTATTTACCAAAGATGAACGAAGAAGAGACGTATACTTACTTTGGTGATTTTAAAGAGCATCCAAGATTCGGT
TTACAGCTGCAGGCGACTTCCTTTCGAAAAGAAATGCCACAAACAAAGCAAGGGGTTATTGCTTATTTATCGAGCAACTT
ATTTAAAGGGATTGGGGAAAAAACAGCAGAGAATATTGTGGATACTTTAGGAGAAGAAGCAATCTCTAAAATCATGAATC
AGCCATCGATTTTAGAGACAGTGCCCAAACTTGCATCAGATAAAGCGAAAATCCTCTATGATACATTAATGAAAAATCAA
GGGTTAGAGCAAGCGATGGTTTCACTAAATCAATATGGGTTTGGTCCGCAATTGTCGATGAAAATTTATCAGGTATATAA
AGAAAATACGCTAGAAATAGTCCAGACAAATCCATATAAATTAGTGGAGGATATTGAAGGAATCGGTTTTGGAAAAGCAG
ATGACCTTGGATCTCAGATTGGAATTACTGGGAATCATCCAGATCGATTAAAGGCTGGCTGTTTGTATATTTTAGAGCTG
AGCAGTAATCAGGAAGGCCATGTCTATCTCCATGCGGAATTTTTACTAGAAAAAGTAAAAGCGCTGCTTGAAGAAAATCA
AAAAGAGGAGATAGAATTTTCGCAAATAGCAGATCAGGTTATTCAGCTAGAGGAAGAAGGAAAAATTATAGTTGAGGATA
AAAAAATATATTTACCTTCTTTGTTTTTTTCAGAAAAAGGACTTGTACGAAATATAAAGCGAGTAATGGAGCAATCTGAA
TATAAAGACCAATTTCCAGAATCGGAATTTCTGCTGGCGTTAGGAAACTTAGAGGACCGTATCGGTGTTCAATATGCTCC
CTCTCAACGAGAGGCGATTCAAACAGCGCTTATGTCCCCGATGCTAATATTGACAGGTGGTCCCGGAACGGGGAAAACAA
CTGTCATAAAGGGAATTGTTGAATTATATGGTGAATTGCACGGTTGTTCTTTAGATCCTAATGATTATAAAAACGATGAA
CCCTATCCGTTTATTCTTGCGGCGCCAACTGGCCGAGCGGCTAAACGAATGGCGGAATCGACAGGTTTACCAGCAGTTAC
TATTCATCGATTGTTGGGCTGGAATGGCACTGGAACATTTGAACGGGATGAGGATCATCCTTTGGAGGGGAAAATCCTCA
TCGTCGATGAAACATCGATGGTTGATATTTGGCTAGCCCATCAATTATTTAAGGCTTTGCCTGAACATATTCAAGTAATT
ATTGTCGGAGATGAAGACCAGCTGCCATCAGTAGGGCCGGGCCAAGTATTAAAAGATCTGCTTGATTCAGCATGTATTCC
TACGGTTAAGTTGAAAGATATTTATCGACAAGCCGAAGGATCATCGATAATCGAGCTGGCACATGAAATGAAAAAAGGCC
AGCTGCCGGCTAATCTTCTTGTGCCCCAAGGGGATCGGTCTTTTATAAAGTGCTCTTCCAGTCAAATTCCGCAGGCAATT
GAAAAAATTGTTTTGAATGCGAAAAACAAAGGCTTCGCGCCAATGGATATTCAAGTATTGGCCCCGATGTATAGAGGACC
AGCAGGAATTGACCGCTTAAATGCTATCTTACAAGAAATATTAAATCCTAATCCCGATGGCACCAGAAAAGAGCTGAAAT
TTGGAGAGGTTACATACCGTATCGGTGATAAAGTCCTTCAACTCGTCAATCAGCCAGAAAGCAATGTTTTTAATGGTGAT
ATGGGTGAGATTGTATCGATTTTTTATGCGAAGGAAAATACGGAAAAGCAAGACATGGTTATTGTTTCGTTTGATGGAAT
AGAAGCAACCTACACGAGACAGGATTTAAATCAAATTACGCTGGCATATTGCTGTTCTGTCCATAAATCGCAAGGCAGTG
AGTTTCCAATCGTCATCATGCCCGTTGTTAAAAGTTATTATCGCATGTTAAGAAGAAATTTAATTTACACCGGAATAACT
AGAAGTAAACAATTTTTGATTCTATGTGGAGAACTGGAAGCAATGGAATTAGGTGTCAGCCGAAATGATGAACTAAACCG
GCAAACAACCTTAAAAGAAAAGATCAAAGAGGCATTTGCTGATGTATATCAACCAGACGAGACGATGGAAATGACAAAAG
AGAAGTCATTTGATTTATTGTATGAAGGTAAAATCAATCAAATCGATCCAATGATCGGAATGGAAAATATCACCCCATAT
GATTTTATGGAAGCATCCGAATCCTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(682-729)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-664)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

AAA domain (AAA_30)

(345-552)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.761

98.391

0.608