Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   STCNRZ1202_RS02775 Genome accession   NZ_CP065506
Coordinates   516796..518532 (+) Length   578 a.a.
NCBI ID   WP_180481229.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CNRZ1202     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 511796..523532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STCNRZ1202_RS02730 (STCNRZ1202_02745) - 512214..512351 (+) 138 WP_172838673.1 hypothetical protein -
  STCNRZ1202_RS02735 (STCNRZ1202_02750) - 512429..512782 (+) 354 WP_347229706.1 hypothetical protein -
  STCNRZ1202_RS02740 (STCNRZ1202_02755) - 513005..513271 (+) 267 WP_347229707.1 efflux RND transporter periplasmic adaptor subunit -
  STCNRZ1202_RS02745 - 513378..513584 (+) 207 WP_347229708.1 ABC transporter permease -
  STCNRZ1202_RS02750 - 513585..513827 (+) 243 WP_224103592.1 ABC transporter permease -
  STCNRZ1202_RS02755 (STCNRZ1202_02765) - 513844..514092 (+) 249 WP_347229709.1 FtsX-like permease family protein -
  STCNRZ1202_RS02760 (STCNRZ1202_02770) - 514089..514304 (+) 216 WP_232085721.1 hypothetical protein -
  STCNRZ1202_RS02765 (STCNRZ1202_02775) rplJ 514595..515098 (+) 504 WP_011225635.1 50S ribosomal protein L10 -
  STCNRZ1202_RS02770 (STCNRZ1202_02780) rplL 515173..515541 (+) 369 WP_011225636.1 50S ribosomal protein L7/L12 -
  STCNRZ1202_RS02775 (STCNRZ1202_02785) rcrP 516796..518532 (+) 1737 WP_180481229.1 ABC transporter ATP-binding protein Regulator
  STCNRZ1202_RS02780 (STCNRZ1202_02790) rcrQ 518545..520332 (+) 1788 WP_347229710.1 ABC transporter ATP-binding protein Regulator
  STCNRZ1202_RS02785 (STCNRZ1202_02795) queA 520430..521473 (-) 1044 WP_347229711.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  STCNRZ1202_RS02790 (STCNRZ1202_02800) - 521623..522324 (+) 702 WP_041826983.1 glucosamine-6-phosphate deaminase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64659.56 Da        Isoelectric Point: 5.7785

>NTDB_id=449758 STCNRZ1202_RS02775 WP_180481229.1 516796..518532(+) (rcrP) [Streptococcus thermophilus strain CNRZ1202]
MSYIWSYLRRYPKWLAMNFTAAILFVIANLGMPTVLARMIDEGINRGDADKLYTYAWVMFGVVLTGIVGRVLLAYAVGKL
TTTMVQVMRNDIYAKLQEYSHHEYEQIGVSSLVTRITSDAFVLMQFADQVLKVGVITPLMMVSSVFLILTTSPSLAWIVA
ISLPLLAVVVWYVAVKTRPLSEKQQATLDKINQYARENLTGLRVIRAFAREDFQEKKFASENAVYADNSSKLFKLTGLTE
PLFVQIIIAMIVAIVWFALNPLGSGALAIGDLVAFIEYSFHALLSFLFLANLFTMYPRTAVSSERLQEIMDMPISINPNE
DGVTETDTKGYLEFDNVTFAYPGETESPVLHNISFKAKAGETIAFIGSTGSGKSSLVQLIPRFYDVTLGRILVDGVDVRD
YNLKALRRKIGFIPQKALLFTGTIGENIRYGKENASHEELNQATDVAQAKEFIESKEERYDSHLAEGGSNLSGGQKQRLS
IARAVVKRPDLYIFDDSFSALDYKTDATLRRRLKEVTQDATVLIVAQRVGTIMDADQIIVLDKGEIVGRGRHEELMESNE
IYREIANSQLNQKSLTED

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=449758 STCNRZ1202_RS02775 WP_180481229.1 516796..518532(+) (rcrP) [Streptococcus thermophilus strain CNRZ1202]
ATGTCTTATATTTGGTCTTATCTCAGGCGTTACCCTAAGTGGCTAGCGATGAATTTTACAGCAGCCATTTTATTTGTTAT
TGCTAACCTGGGTATGCCGACGGTTCTTGCTAGAATGATTGATGAGGGAATTAACCGTGGGGATGCTGACAAGCTTTATA
CCTATGCTTGGGTCATGTTTGGTGTGGTCTTAACTGGTATTGTTGGTCGTGTGCTTTTGGCCTATGCGGTTGGTAAGTTG
ACGACTACTATGGTGCAGGTCATGCGTAATGATATCTACGCCAAACTTCAGGAGTATTCACACCATGAGTACGAACAAAT
TGGGGTATCTTCTTTGGTGACTCGTATCACGTCGGATGCTTTTGTTCTCATGCAGTTTGCAGATCAAGTCCTCAAGGTGG
GTGTTATCACTCCTTTGATGATGGTTTCCAGTGTCTTTTTGATTTTGACGACAAGTCCATCTTTGGCTTGGATTGTGGCA
ATCTCCTTGCCTTTACTAGCTGTAGTTGTCTGGTATGTGGCGGTAAAAACGCGTCCGCTTTCTGAAAAGCAACAGGCAAC
TCTCGACAAGATTAACCAGTATGCTCGTGAAAATCTGACTGGACTTCGTGTCATCCGTGCTTTCGCTAGAGAAGATTTCC
AAGAGAAGAAGTTTGCCTCTGAAAATGCTGTCTATGCGGATAATTCAAGCAAGCTCTTTAAATTGACTGGTTTAACAGAG
CCACTTTTTGTACAAATCATCATCGCTATGATTGTGGCTATTGTTTGGTTTGCCCTAAATCCATTAGGTTCTGGAGCTCT
GGCAATCGGGGACTTGGTTGCCTTCATTGAGTACAGTTTCCATGCACTATTATCCTTCCTCTTTCTAGCTAATCTCTTTA
CTATGTATCCTCGTACAGCGGTATCTAGTGAACGTCTGCAGGAAATTATGGATATGCCTATTTCTATCAACCCAAATGAA
GATGGGGTGACAGAGACTGATACTAAGGGATATTTGGAATTTGATAATGTGACCTTTGCCTATCCTGGTGAAACTGAGAG
TCCTGTTCTACACAATATTTCTTTTAAGGCTAAGGCAGGTGAAACTATTGCCTTTATTGGGTCTACGGGCTCAGGAAAAT
CATCACTTGTACAGTTGATTCCACGCTTTTATGATGTCACACTTGGACGTATTCTTGTGGATGGTGTGGATGTACGTGAC
TACAATCTTAAGGCTCTTCGTCGTAAGATTGGCTTTATTCCACAAAAAGCTCTACTCTTTACTGGAACTATCGGTGAAAA
TATCCGTTATGGTAAGGAAAATGCTAGTCATGAAGAATTGAATCAAGCTACGGACGTGGCTCAGGCTAAGGAATTTATTG
AAAGCAAGGAAGAACGCTATGATTCTCACTTGGCTGAGGGTGGTAGCAACCTTTCTGGGGGACAGAAGCAGCGTTTGTCA
ATTGCACGTGCGGTGGTTAAACGTCCTGATCTCTATATCTTTGATGATTCCTTCTCTGCCTTGGACTACAAGACTGATGC
GACCTTGCGCCGTCGTCTAAAAGAAGTGACTCAGGATGCGACGGTCTTGATCGTGGCTCAACGTGTGGGAACCATTATGG
ATGCAGATCAGATTATCGTTCTTGATAAGGGTGAAATTGTTGGTCGTGGCCGTCACGAAGAGCTCATGGAAAGTAATGAG
ATTTACCGTGAGATTGCTAATTCACAATTGAATCAAAAGAGTCTTACAGAAGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(350-497)

ABC transporter transmembrane region (ABC_membrane)

(17-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.189

91.696

0.369