Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   STT55_RS09350 Genome accession   NZ_CP065502
Coordinates   1794964..1796232 (-) Length   422 a.a.
NCBI ID   WP_022097049.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST55     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1789964..1801232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STT55_RS09315 (STT55_09290) - 1790281..1791822 (+) 1542 WP_002948651.1 ABC transporter ATP-binding protein -
  STT55_RS09320 - 1791955..1792174 (+) 220 Protein_1779 hypothetical protein -
  STT55_RS09325 (STT55_09295) - 1792204..1793181 (+) 978 WP_011226670.1 replication initiation protein -
  STT55_RS09330 (STT55_09300) - 1793193..1793381 (+) 189 WP_000369785.1 DUF3173 domain-containing protein -
  STT55_RS09335 (STT55_09305) - 1793383..1794522 (+) 1140 WP_002885655.1 site-specific integrase -
  STT55_RS09350 (STT55_09320) rarA 1794964..1796232 (-) 1269 WP_022097049.1 replication-associated recombination protein A Machinery gene
  STT55_RS09355 (STT55_09325) rpmB 1796402..1796590 (+) 189 WP_002952184.1 50S ribosomal protein L28 -
  STT55_RS09360 (STT55_09330) - 1796717..1796983 (+) 267 WP_002952186.1 IreB family regulatory phosphoprotein -
  STT55_RS09365 (STT55_09335) ruvX 1796983..1797402 (+) 420 WP_002952187.1 Holliday junction resolvase RuvX -
  STT55_RS09370 (STT55_09340) - 1797511..1797816 (+) 306 WP_002952188.1 DUF1292 domain-containing protein -
  STT55_RS09375 (STT55_09345) - 1798029..1799675 (+) 1647 WP_096811708.1 hypothetical protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46477.95 Da        Isoelectric Point: 6.7339

>NTDB_id=449617 STT55_RS09350 WP_022097049.1 1794964..1796232(-) (rarA) [Streptococcus thermophilus strain ST55]
MPDNLALRMRPRSISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
NVLGDKERGFAFEVHLDDDALDFIATATNGDLRSAYNSLDLAVMSTPASGNGQHHITLDIVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYKAMDAALADLRKSGNLPIPRHLRDGHYAGSKELGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=449617 STT55_RS09350 WP_022097049.1 1794964..1796232(-) (rarA) [Streptococcus thermophilus strain ST55]
ATGCCAGATAATCTTGCTTTACGCATGCGTCCACGTTCAATTTCAGAGGTGATTGGTCAGAAGCATTTAGTTGGTGAAGG
TAAAATTATTCGCCGTATGGTAGAGGCGAATATGCTGTCGTCAATGATTCTCTACGGACCTCCAGGAATCGGGAAAACCT
CGATAGCCAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACTTTTAATGCCACTGTCGATAGCAAAAAACGTCTA
CAGGAAATTGCAGAAGAGGCTAAATTTTCAGGTGGTTTAGTTCTACTTTTAGATGAGATCCATCGTTTGGATAAAGCGAA
ACAAGATTTTTTGTTACCATTATTAGAGAACGGAAATATTATCATGATTGGTGCCACAACCGAGAATCCGTTTTTTTCTG
TGACACCAGCCATCCGTAGCCGTGTACAAATATTTGAGTTGGAACCACTCTCTAATGAAGATATCAAGGAAGCTATTTTG
AATGTTCTAGGGGACAAGGAGCGTGGCTTCGCCTTTGAGGTTCACTTAGATGATGATGCTCTAGATTTTATTGCGACAGC
TACTAATGGTGATTTACGATCGGCATATAATTCTTTGGATCTGGCTGTCATGTCGACACCAGCTTCAGGAAATGGGCAGC
ATCATATTACTTTAGACATAGTTGAAAATAGCTTACAACGCAGTTATATTACTATGGATAAAGACGGTGATGGGCACTAT
GATGTCCTTTCTGCCTTGCAAAAATCTATTCGAGGATCTGATGTTAATGCCAGTCTTCACTATGCGGCACGTTTGGTTGA
GGCAGGGGATTTGCCTAGTCTAGCACGTCGCTTGACTGTAATTGCCTATGAGGATATTGGTTTAGCTAATCCAGATGCAC
AAGTTCACACGGTCACAGCCTTGGAAGCTGCACAGAAAATAGGTTTTCCGGAGGCACGTATTTTGATTGCCAACGTAGTT
ATTGACTTAGCATTATCACCTAAGTCGAATTCGGCTTATAAGGCAATGGATGCTGCCCTGGCGGATCTTAGAAAATCAGG
GAATTTACCGATTCCTCGTCATTTGAGAGATGGACACTATGCTGGAAGCAAGGAACTGGGCAATGCACAAGATTATAAGT
ATCCACATGCCTATCCTGAAAAGTGGGTTAAGCAACAATACCTTCCGGATAAATTAAGAGGTGTGAATTATTTCCAACCC
AATGAAACCGGGAAATATGAAAGAGCTCTTGGAGCTAATAAAGAACGAATCGATAAGTTATCTAGATAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.905

99.289

0.595