Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   FOC96_RS13530 Genome accession   NZ_CP053965
Coordinates   1915390..1916169 (+) Length   259 a.a.
NCBI ID   WP_000421288.1    Uniprot ID   Q81WK7
Organism   Bacillus cereus strain FDAARGOS_802     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1910390..1921169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC96_RS13510 (FOC96_13505) trmFO 1911044..1912348 (+) 1305 WP_003295032.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  FOC96_RS13515 (FOC96_13510) xerC 1912414..1913313 (+) 900 WP_001995695.1 tyrosine recombinase XerC -
  FOC96_RS13520 (FOC96_13515) hslV 1913356..1913898 (+) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  FOC96_RS13525 (FOC96_13520) hslU 1913921..1915312 (+) 1392 WP_000550088.1 ATP-dependent protease ATPase subunit HslU -
  FOC96_RS13530 (FOC96_13525) codY 1915390..1916169 (+) 780 WP_000421288.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  FOC96_RS13535 (FOC96_13530) rpsB 1916522..1917223 (+) 702 WP_000111483.1 30S ribosomal protein S2 -
  FOC96_RS13540 (FOC96_13535) tsf 1917327..1918214 (+) 888 WP_001018581.1 translation elongation factor Ts -
  FOC96_RS13545 (FOC96_13540) pyrH 1918281..1919003 (+) 723 WP_000042663.1 UMP kinase -
  FOC96_RS13550 (FOC96_13545) frr 1919006..1919563 (+) 558 WP_000531503.1 ribosome recycling factor -
  FOC96_RS13555 (FOC96_13550) uppS 1919649..1920425 (+) 777 WP_000971301.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28774.05 Da        Isoelectric Point: 4.7947

>NTDB_id=449525 FOC96_RS13530 WP_000421288.1 1915390..1916169(+) (codY) [Bacillus cereus strain FDAARGOS_802]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=449525 FOC96_RS13530 WP_000421288.1 1915390..1916169(+) (codY) [Bacillus cereus strain FDAARGOS_802]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCACATCTTCGAGGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q81WK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.081

100

0.811
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459