Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   FOC76_RS13160 Genome accession   NZ_CP053955
Coordinates   2526163..2526942 (+) Length   259 a.a.
NCBI ID   WP_000421288.1    Uniprot ID   Q81WK7
Organism   Bacillus tropicus strain FDAARGOS_782     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2521163..2531942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC76_RS13140 (FOC76_13140) trmFO 2521817..2523121 (+) 1305 WP_002022163.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  FOC76_RS13145 (FOC76_13145) xerC 2523187..2524086 (+) 900 WP_001101227.1 tyrosine recombinase XerC -
  FOC76_RS13150 (FOC76_13150) hslV 2524129..2524671 (+) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  FOC76_RS13155 (FOC76_13155) hslU 2524694..2526085 (+) 1392 WP_000550074.1 ATP-dependent protease ATPase subunit HslU -
  FOC76_RS13160 (FOC76_13160) codY 2526163..2526942 (+) 780 WP_000421288.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  FOC76_RS13165 (FOC76_13165) rpsB 2527292..2527993 (+) 702 WP_000111483.1 30S ribosomal protein S2 -
  FOC76_RS13170 (FOC76_13170) tsf 2528097..2528984 (+) 888 WP_001018581.1 translation elongation factor Ts -
  FOC76_RS13175 (FOC76_13175) pyrH 2529051..2529773 (+) 723 WP_000042663.1 UMP kinase -
  FOC76_RS13180 (FOC76_13180) frr 2529776..2530333 (+) 558 WP_000531501.1 ribosome recycling factor -
  FOC76_RS13185 (FOC76_13185) uppS 2530419..2531195 (+) 777 WP_000971301.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28774.05 Da        Isoelectric Point: 4.7947

>NTDB_id=449444 FOC76_RS13160 WP_000421288.1 2526163..2526942(+) (codY) [Bacillus tropicus strain FDAARGOS_782]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=449444 FOC76_RS13160 WP_000421288.1 2526163..2526942(+) (codY) [Bacillus tropicus strain FDAARGOS_782]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATTGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAATAGTGCTTACACAGCATTTCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATTGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCAGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q81WK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.081

100

0.811
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459