Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   STAVA116_RS08670 Genome accession   NZ_CP065498
Coordinates   1676051..1677319 (-) Length   422 a.a.
NCBI ID   WP_087010213.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain AVA116     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1671051..1682319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAVA116_RS08635 (STAVA116_08625) - 1671355..1672896 (+) 1542 WP_087010211.1 ABC transporter ATP-binding protein -
  STAVA116_RS08640 - 1673029..1673244 (+) 216 WP_041827116.1 hypothetical protein -
  STAVA116_RS08645 (STAVA116_08630) - 1673291..1674268 (+) 978 WP_087010212.1 replication initiation protein -
  STAVA116_RS08650 (STAVA116_08635) - 1674280..1674468 (+) 189 WP_000369785.1 DUF3173 domain-containing protein -
  STAVA116_RS08655 (STAVA116_08640) - 1674470..1675609 (+) 1140 WP_002885655.1 site-specific integrase -
  STAVA116_RS08670 (STAVA116_08655) rarA 1676051..1677319 (-) 1269 WP_087010213.1 replication-associated recombination protein A Machinery gene
  STAVA116_RS08675 (STAVA116_08660) rpmB 1677490..1677678 (+) 189 WP_002952184.1 50S ribosomal protein L28 -
  STAVA116_RS08680 (STAVA116_08665) - 1677805..1678071 (+) 267 WP_002952186.1 IreB family regulatory phosphoprotein -
  STAVA116_RS08685 (STAVA116_08670) ruvX 1678071..1678490 (+) 420 WP_002952187.1 Holliday junction resolvase RuvX -
  STAVA116_RS08690 (STAVA116_08675) - 1678599..1678904 (+) 306 WP_011681733.1 DUF1292 domain-containing protein -
  STAVA116_RS08695 (STAVA116_08680) - 1679117..1680763 (+) 1647 WP_087010214.1 hypothetical protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46433.94 Da        Isoelectric Point: 6.8977

>NTDB_id=449407 STAVA116_RS08670 WP_087010213.1 1676051..1677319(-) (rarA) [Streptococcus thermophilus strain AVA116]
MPDNLALRMRPRSISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
NVLGDKERGFAFEVHLDDDALDFIATATNGDLRSAYNSLDLAVMSTPASGNGQHHITLDIVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTLIAYEDIGLANPDAQVHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYKAMDAALADLRKSGNLPIPRHLRDGHYAGSKALGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=449407 STAVA116_RS08670 WP_087010213.1 1676051..1677319(-) (rarA) [Streptococcus thermophilus strain AVA116]
ATGCCAGATAATCTTGCTTTACGTATGCGTCCACGTTCAATTTCAGAGGTGATTGGTCAGAAGCATTTAGTTGGTGAAGG
TAAAATTATTCGCCGTATGGTAGAGGCGAATATGCTGTCGTCAATGATTCTCTACGGACCTCCAGGAATCGGGAAAACCT
CGATAGCCAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACTTTTAATGCCACTGTCGATAGCAAAAAACGTCTA
CAGGAAATTGCAGAAGAGGCTAAATTTTCAGGTGGTTTAGTTCTACTTTTAGATGAGATCCATCGTTTGGATAAAGCGAA
ACAAGATTTTTTGTTACCATTATTAGAGAACGGAAATATTATCATGATTGGTGCCACAACCGAGAATCCGTTTTTTTCTG
TAACACCAGCCATCCGTAGCCGTGTACAAATATTTGAGTTGGAACCACTCTCTAATGAAGATATCAAGGAAGCTATTTTG
AATGTTCTAGGGGACAAGGAGCGTGGCTTCGCCTTTGAGGTTCACTTAGATGATGATGCTCTAGATTTTATTGCGACAGC
TACTAATGGTGATTTACGATCGGCATATAATTCTTTGGATCTGGCTGTCATGTCGACACCAGCTTCAGGAAATGGTCAGC
ATCATATTACCTTAGACATAGTGGAAAATAGCTTACAACGCAGTTATATTACTATGGATAAAGACGGTGATGGGCACTAT
GATGTCCTTTCTGCCTTGCAAAAATCTATTCGAGGATCTGATGTTAATGCCAGTCTTCACTATGCGGCACGTTTGGTTGA
GGCAGGGGATTTGCCTAGTCTAGCACGTCGCTTGACTTTGATTGCCTATGAGGATATTGGTTTAGCTAATCCAGATGCAC
AAGTTCACACGGTCACAGCCTTGGAAGCTGCACAGAAAATAGGTTTTCCGGAGGCACGTATTTTGATTGCCAACGTAGTT
ATTGACTTAGCATTATCACCTAAGTCGAATTCGGCTTATAAGGCAATGGATGCTGCCCTGGCGGATCTTAGAAAGTCTGG
GAATTTACCTATTCCGCGTCATCTGAGAGATGGACACTATGCTGGAAGTAAGGCACTGGGTAATGCACAAGATTATAAGT
ATCCCCATGCCTATCCTGAAAAGTGGGTTAAGCAACAATACCTTCCAGATAAATTAAGAGGAGTCAATTATTTCCAACCT
AATGAAACTGGGAAATACGAAAGAGCTCTTGGAGCTAATAAAGAACGAATCGATAAGTTATCTAGATAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

AAA C-terminal domain (AAA_assoc_2)

(173-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.427

99.289

0.59