Detailed information NTG0449369

Bioinformatically predicted

Overview

• Name: amiD
• Type: Regulator
• Locus tag: STAVA116_RS06310
• Genome accession: NZ_CP065498
• Coordinates: 1226330..1227256 (-)
• Length: 308 a.a.
• NCBI ID: WP_002946409.1
• Uniprot ID: Q5M3H5
• Organism: Streptococcus thermophilus strain AVA116
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1221330..1232256

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STAVA116_RS06280 (STAVA116_06250)	-	1221409..1222203 (-)	795	WP_087010061.1	HAD family hydrolase	-
STAVA116_RS06285 (STAVA116_06255)	-	1222386..1222763 (+)	378	WP_087010062.1	GntR family transcriptional regulator	-
STAVA116_RS06290 (STAVA116_06260)	-	1222768..1223466 (+)	699	WP_087010063.1	ABC transporter ATP-binding protein	-
STAVA116_RS06295 (STAVA116_06265)	-	1223478..1224263 (+)	786	WP_002951425.1	hypothetical protein	-
STAVA116_RS06300 (STAVA116_06270)	-	1224313..1225242 (-)	930	WP_002951426.1	ATP-binding cassette domain-containing protein	-
STAVA116_RS06305 (STAVA116_06275)	amiE	1225235..1226320 (-)	1086	WP_011226304.1	ABC transporter ATP-binding protein	Regulator
STAVA116_RS06310 (STAVA116_06280)	amiD	1226330..1227256 (-)	927	WP_002946409.1	oligopeptide ABC transporter permease OppC	Regulator
STAVA116_RS06315 (STAVA116_06285)	amiC	1227256..1228749 (-)	1494	WP_002946410.1	ABC transporter permease	Regulator
STAVA116_RS06320 (STAVA116_06290)	amiA	1228811..1230778 (-)	1968	WP_087010065.1	peptide ABC transporter substrate-binding protein	Regulator

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34694.85 Da
• Isoelectric Point: 9.7054

>NTDB_id=449369 STAVA116_RS06310 WP_002946409.1 1226330..1227256(-) (amiD) [Streptococcus thermophilus strain AVA116]
MASIDKSKFQFVKRDDFASETIDAPSYSYWKSVMRQFFKKKSTVVMLGILITIILMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDGNGKSLFDSVWFGARNSILIAVIATFLNVIIGLLVGAVWGISKTFDMIMMEIYNIISNIPSLLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRNLGTPTAKIVIKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide

• Length: 927 bp

>NTDB_id=449369 STAVA116_RS06310 WP_002946409.1 1226330..1227256(-) (amiD) [Streptococcus thermophilus strain AVA116]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCGTCTTA
CTCATACTGGAAATCAGTGATGCGTCAATTTTTTAAAAAGAAATCAACAGTTGTAATGTTGGGAATCTTGATTACTATTA
TTTTAATGAGTTTCATCTACCCAATGTTTTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACGGTAATGGTAAGTCTCTATTTGACAGTGTTTGGTTTGGGGC
TCGTAATTCTATCCTTATCGCTGTTATCGCTACCTTCCTGAATGTTATAATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCCTCTCTCCTTGTGGTTATCGTC
TTGACTTACTCATTAGGTGCTGGTTTCTGGAATATGATTTTTGCCATGACCGTAACAGGTTGGATCGGTATTGCCTATAC
AATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGCAATTTGGGAACACCAACGGCTAAGA
TTGTGATTAAAAATATCATGCCACAACTTGTGTCAGTTATTGTAACCATGGCTAGTCAACTTTTGCCAGGATTTATCTCT
TATGAGGCCTTCCTTTCATACTTTGGTTTGGGTCTTCCTGTTACTACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCCTATCTCTTCTGGATTCCATTGACTACCTTGATTCTTGTTTCTCTTGCCCTCTTTATTG
TTGGTCAAAACTTAGCGGATGCTAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterProScan.

• N-terminal TM domain of oligopeptide transport permease C (OppC_N) (28-71)

• Binding-protein-dependent transport system inner membrane component (BPD_transp_1) (125-306)

3D structure

• AlphaFold DB: Q5M3H5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiD	Streptococcus thermophilus LMG 18311	100	100	1
amiD	Streptococcus thermophilus LMD-9	100	100	1
amiD	Streptococcus salivarius strain HSISS4	96.429	100	0.964