Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   FOC93_RS30020 Genome accession   NZ_CP053951
Coordinates   5204791..5205570 (+) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus cereus strain FDAARGOS_799     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 5199791..5210570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC93_RS30000 (FOC93_30010) trmFO 5200445..5201749 (+) 1305 WP_000213002.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  FOC93_RS30005 (FOC93_30015) xerC 5201815..5202714 (+) 900 WP_001101241.1 tyrosine recombinase XerC -
  FOC93_RS30010 (FOC93_30020) hslV 5202757..5203299 (+) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  FOC93_RS30015 (FOC93_30025) hslU 5203322..5204713 (+) 1392 WP_000550087.1 ATP-dependent protease ATPase subunit HslU -
  FOC93_RS30020 (FOC93_30030) codY 5204791..5205570 (+) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  FOC93_RS30025 (FOC93_30035) rpsB 5205920..5206621 (+) 702 WP_000111485.1 30S ribosomal protein S2 -
  FOC93_RS30030 (FOC93_30040) tsf 5206725..5207612 (+) 888 WP_001018578.1 translation elongation factor Ts -
  FOC93_RS30035 (FOC93_30045) pyrH 5207679..5208401 (+) 723 WP_000042668.1 UMP kinase -
  FOC93_RS30040 (FOC93_30050) frr 5208404..5208961 (+) 558 WP_000531501.1 ribosome recycling factor -
  FOC93_RS30045 (FOC93_30055) uppS 5209047..5209823 (+) 777 WP_000971296.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=449366 FOC93_RS30020 WP_000421290.1 5204791..5205570(+) (codY) [Bacillus cereus strain FDAARGOS_799]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=449366 FOC93_RS30020 WP_000421290.1 5204791..5205570(+) (codY) [Bacillus cereus strain FDAARGOS_799]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCACATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459