Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   FOC93_RS27195 Genome accession   NZ_CP053951
Coordinates   4685540..4687876 (+) Length   778 a.a.
NCBI ID   WP_172852576.1    Uniprot ID   -
Organism   Bacillus cereus strain FDAARGOS_799     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4680540..4692876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC93_RS27175 (FOC93_27185) - 4681946..4682362 (+) 417 WP_000704116.1 Rrf2 family transcriptional regulator -
  FOC93_RS27180 (FOC93_27190) - 4682398..4683543 (+) 1146 WP_000439893.1 cysteine desulfurase family protein -
  FOC93_RS27185 (FOC93_27195) mnmA 4683560..4684675 (+) 1116 WP_001038010.1 tRNA 2-thiouridine(34) synthase MnmA -
  FOC93_RS27190 (FOC93_27200) - 4684785..4685444 (+) 660 WP_000066409.1 tetratricopeptide repeat protein -
  FOC93_RS27195 (FOC93_27205) recD2 4685540..4687876 (+) 2337 WP_172852576.1 ATP-dependent RecD-like DNA helicase Machinery gene
  FOC93_RS27200 (FOC93_27210) - 4688006..4688194 (+) 189 WP_000469281.1 hypothetical protein -
  FOC93_RS27205 (FOC93_27215) - 4688213..4688341 (+) 129 WP_001053553.1 YrzQ family protein -
  FOC93_RS27210 (FOC93_27220) - 4688388..4688600 (-) 213 WP_000242535.1 hypothetical protein -
  FOC93_RS27215 (FOC93_27225) - 4688777..4689844 (+) 1068 WP_000793128.1 AI-2E family transporter -
  FOC93_RS27220 (FOC93_27230) - 4689889..4690233 (-) 345 WP_000209579.1 PH domain-containing protein -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87476.00 Da        Isoelectric Point: 5.3294

>NTDB_id=449358 FOC93_RS27195 WP_172852576.1 4685540..4687876(+) (recD2) [Bacillus cereus strain FDAARGOS_799]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYMVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPEALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMRKDQLVRETMSLLNNQEGRVTEEDIIGCIETMQSEGKVIIEEERVYLATLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLKTLGEIEEQLNVQYAPFQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQKDRSFIGCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQQVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYKKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLASRLQESQGELQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=449358 FOC93_RS27195 WP_172852576.1 4685540..4687876(+) (recD2) [Bacillus cereus strain FDAARGOS_799]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAGAAAAAGTTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACGTATGACGAAAAGAAAGTAATGA
TAAACGGTCATTTTCCCCGCATGCATGAAGATGAAGTGTTTACATTGACAGGTCATTTTAAGGACCATCCAAAGTATGGA
AAACAATATATGGTTGAAACATTTAAAAAAGAATTGCCGCAAACAAAAGCAGGTATGGTGCAATATTTAGCGAGTGATTT
ATTTAAAGGGATAGGAAAGCGTACAGCTGAAAAAATTGTGGACCATCTCGGAGAACATGCTATTTCTAAAATTATGGATG
ACCCTGAGGCATTAAATGGTGTCGTTAATAAACAAAAGGCTCAGGAAATATATGAGACAATTGTTGAACATCAAGGGCTA
GAGAAAGTAATGAGCTTTTTAAATGGCTACGGTTTTGGAACGAAACTTTCTATTAAGATTTACCAGCAATATAAAGAGAT
GACATTAGAAGTGATTCGTAATAATCCGTATCAACTTATCGAAGAAGTGGACGGGATTGGTTTTGGAAGAGCGGATGATA
TAGGGCGTGCGTTAGGGATATCGGGTAATCATGACGACCGTGTACGCGCAGGATGTTTTTACACATTAGAGAATGTCTCA
TTACAACTTGGTCACGTTTATATGAGGAAAGATCAACTTGTAAGAGAAACGATGTCACTTTTAAACAATCAAGAAGGAAG
AGTGACTGAGGAAGATATTATAGGTTGTATTGAAACGATGCAAAGTGAAGGGAAAGTCATCATAGAAGAAGAACGAGTGT
ATTTAGCAACGTTATTCTACTCTGAGAAAGGTGTTGTAAAGTCTATTCGCAGGCTTATGAATCAAGAAGAAACACCTTCA
TTTCCAGAAGCAGAAGTGTTAAAAACGTTAGGTGAAATTGAAGAACAACTGAACGTACAATATGCACCGTTTCAGCAAGA
AGCAATTCAAACGGCACTTCATAAACCGATGATGTTATTGACAGGTGGACCAGGAACAGGGAAAACAACAGTTATTAAAG
GGATTGTTGAAATGTATGCATCACTACACGGGTTATCGTTAAATCCGAATGAATACAGTGATGATAATCCATTTCCAATA
CTATTAACAGCTCCAACAGGAAGAGCAGCGAAGCGGATGAGTGAATCGACAGGACTTCCAGCTTGCACAATTCACCGTTT
ACTTGGTTGGACGCCAGAAGGATCTTTCCAGCGTAATGAAACGGATCCTGTCCAAGGTAAGCTCCTTATTATCGATGAAT
TTTCAATGGTTGATATTTGGCTTGCAAATCAGCTATTTAAGTCGTTGCCGACGAACATTCAAGTTATCGTTGTAGGTGAT
GAAGATCAGTTGCCATCTGTAGGACCTGGACAAGTATTAAAAGATTTATTAAATGCAGGCGCAGTTCCGACAGTGAAGCT
TACTGAAATTTATCGTCAAGCGGAAGGCTCATCAGTGATTCAACTTGCCCATGCGATAAAAAATGGAACTCTACCACCAG
ATTTAGCACAAAATCAAAAAGATCGTTCATTTATCGGATGTACAGGAGCTCAAATTGTTGAGGTTGTGAAAAAAGTTTGT
GAAAATGCTAAAACAAAAGGCTTTAGCGCAAGAGATGTACAAGTATTAGCACCGATGTACCGCGGGCCTGCTGGTATTAA
TGTATTAAACGAAGCGCTGCAACAAGTATTTAATCCGAAGAGGGAAAAGAGTAAAGAAATTGCTTACGGTGATGTTGTGT
ACCGAAGAGGCGATAAAGTACTGCAACTCGTGAATCAGCCGGAGAGCCAAGTGTTTAATGGTGATATTGGGGAAATTGTT
TCGGTGTTTTATGCGAAAGAAAACGTTGAGCAACAAGATATGATTATCGTTTCATTTGATGGAATTGAGGTAACGTATAA
GAAGCCCGATTTAAATCAAATTACGCATGCATATTGTTGTTCCATTCATAAATCACAAGGTAGTGAATTTCCGATTGTTA
TTATGCCAATCGTGAAAAGTTACAACCGTATGTTACGTCGTAATTTAATTTACACGGGCATTACAAGAAGTAAGAAGTTC
CTTATTATTTGCGGAGAGGAAGCAGCTTTCCAATCTGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACAACCTTAGC
TAGTCGCTTGCAAGAATCACAAGGAGAATTACAGATGGTCACAGTTAATGGCGAGGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

AAA domain (AAA_30)

(341-548)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.016

100

0.58