Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   STAVA116_RS02660 Genome accession   NZ_CP065498
Coordinates   499039..500775 (+) Length   578 a.a.
NCBI ID   WP_087009747.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain AVA116     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 494039..505775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAVA116_RS02620 - 494562..494696 (+) 135 WP_257739147.1 hypothetical protein -
  STAVA116_RS02625 (STAVA116_02605) - 494719..495030 (+) 312 WP_087009745.1 hypothetical protein -
  STAVA116_RS02630 (STAVA116_02610) - 495270..495515 (+) 246 WP_087009746.1 ABC transporter substrate-binding protein -
  STAVA116_RS02635 - 495508..495831 (+) 324 WP_231906203.1 ABC transporter permease -
  STAVA116_RS02640 - 495832..495990 (+) 159 WP_231906204.1 ABC transporter permease -
  STAVA116_RS02645 - 496048..496551 (+) 504 WP_231906205.1 FtsX-like permease family protein -
  STAVA116_RS02650 (STAVA116_02620) rplJ 496842..497345 (+) 504 WP_011225635.1 50S ribosomal protein L10 -
  STAVA116_RS02655 (STAVA116_02625) rplL 497420..497788 (+) 369 WP_011225636.1 50S ribosomal protein L7/L12 -
  STAVA116_RS02660 (STAVA116_02630) rcrP 499039..500775 (+) 1737 WP_087009747.1 ABC transporter ATP-binding protein Regulator
  STAVA116_RS02665 (STAVA116_02635) rcrQ 500788..502575 (+) 1788 WP_087009748.1 ABC transporter ATP-binding protein Regulator
  STAVA116_RS02670 (STAVA116_02640) queA 502673..503716 (-) 1044 WP_087009749.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  STAVA116_RS02675 (STAVA116_02645) - 503866..504567 (+) 702 WP_084825627.1 glucosamine-6-phosphate deaminase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64729.65 Da        Isoelectric Point: 5.7785

>NTDB_id=449338 STAVA116_RS02660 WP_087009747.1 499039..500775(+) (rcrP) [Streptococcus thermophilus strain AVA116]
MSYIWSYLRRYPKWLAMNFTAAILFVIANLGMPTVLARMIDEGINRGDADKLYTYAWVMFGVVLTGIVGRVLLAYAVGKL
TTTMVQVMRNDIYAKLQEYSHHEYEQIGVSSLVTRITSDAFVLMQFADQVLKVGIITPLMMVSSVFLILTTSPSLAWIVA
ISLPLLAVVVWYVAVKTRPLSEKQQATLDKINQYARENLTGLRVIRAFTREDFQEKKFASENAVYADNSSKLFKLTGLTE
PLFVQIIIAMIVAIVWFALNPLGSGALAIGDLVAFIEYSFHALLSFLFLANLFTMYPRTAVSSERLQEIMDMPISINPNE
DGVTETDTKGYLEFDNVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVQLIPRFYDVTLGRILVDGVDVRD
YNLKALRRKIGFIPQKALLFTGTIGENIRYGKENASHEELNQATDVAQAKEFIESKEERYDSHLAEGGSNLSGGQKQRLS
IARAVVKRPDLYIFDDSFSALDYKTDATLRRRLKEVTQDATVLIVAQRVGTIMDADQIIVLDKGEIVGRGRHEELMESNE
IYREIANSQLNQKSLTED

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=449338 STAVA116_RS02660 WP_087009747.1 499039..500775(+) (rcrP) [Streptococcus thermophilus strain AVA116]
ATGTCTTATATTTGGTCTTATCTCAGGCGTTATCCTAAGTGGCTAGCGATGAATTTTACGGCAGCCATTTTATTTGTTAT
TGCTAACCTGGGTATGCCGACGGTTCTTGCTAGAATGATTGATGAGGGAATTAACCGTGGGGATGCTGACAAGCTTTATA
CCTATGCTTGGGTCATGTTTGGTGTGGTCTTAACTGGTATTGTTGGTCGTGTGCTTTTGGCCTATGCGGTTGGTAAGTTG
ACGACTACTATGGTGCAGGTCATGCGTAATGATATCTACGCCAAACTTCAGGAGTATTCACACCATGAGTACGAACAAAT
TGGGGTATCTTCTTTGGTGACTCGTATCACGTCGGATGCTTTTGTTCTCATGCAGTTTGCAGATCAAGTCCTCAAGGTGG
GTATTATCACTCCTTTGATGATGGTTTCCAGTGTCTTTTTGATTTTGACGACAAGTCCATCTTTGGCTTGGATTGTGGCA
ATCTCCTTGCCTTTACTAGCTGTAGTTGTCTGGTATGTGGCGGTAAAAACGCGTCCGCTTTCTGAAAAGCAACAGGCAAC
TCTCGACAAGATTAACCAGTATGCTCGTGAAAATCTGACTGGACTTCGTGTCATCCGTGCTTTCACTAGAGAAGATTTCC
AAGAGAAGAAGTTTGCCTCTGAAAATGCTGTCTATGCGGATAATTCAAGCAAGCTCTTTAAATTGACTGGTTTAACAGAG
CCACTTTTTGTACAAATCATCATCGCTATGATTGTGGCTATTGTTTGGTTTGCCCTAAATCCATTAGGTTCTGGAGCTCT
GGCAATCGGGGACTTGGTTGCCTTCATTGAGTACAGTTTCCATGCACTATTATCCTTCCTCTTTCTAGCTAATCTCTTTA
CTATGTATCCTCGTACAGCGGTATCTAGTGAACGTCTGCAGGAAATTATGGATATGCCTATTTCTATCAACCCAAATGAA
GATGGGGTGACAGAGACTGATACTAAGGGATATTTGGAATTTGATAATGTGACCTTTGCCTATCCTGGTGAAACTGAGAG
TCCTGTTCTACACAATATTTCTTTTAAGGCTAAGCCAGGTGAAACTATTGCCTTTATTGGGTCTACGGGCTCAGGAAAGT
CATCACTTGTACAGTTGATTCCACGCTTTTATGATGTTACACTTGGACGTATTCTTGTGGATGGTGTGGATGTACGTGAC
TACAATCTTAAGGCTCTTCGTCGTAAGATTGGCTTTATTCCACAAAAAGCTCTACTCTTTACTGGAACTATCGGTGAAAA
TATCCGTTATGGTAAGGAAAATGCTAGTCATGAAGAATTGAATCAAGCTACGGACGTGGCTCAGGCTAAGGAATTTATTG
AAAGCAAGGAAGAACGCTATGATTCTCACTTGGCTGAGGGTGGTAGCAACCTTTCTGGGGGACAGAAGCAGCGTTTGTCA
ATTGCACGTGCGGTGGTTAAACGTCCTGATCTCTATATCTTTGATGATTCCTTCTCTGCCTTGGACTACAAGACTGATGC
GACCTTGCGCCGTCGTCTAAAAGAAGTGACTCAGGATGCGACGGTCTTGATCGTGGCTCAACGTGTGGGAACCATTATGG
ATGCTGATCAGATTATCGTTCTTGATAAGGGTGAAATTGTTGGTCGTGGCCGTCACGAAGAGCTCATGGAAAGTAATGAG
ATTTACCGTGAGATTGCTAATTCACAATTGAATCAAAAGAGTCTTACAGAAGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(17-279)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40

91.696

0.367