Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   HQQ90_RS02745 Genome accession   NZ_CP053940
Coordinates   687540..689408 (+) Length   622 a.a.
NCBI ID   WP_042994365.1    Uniprot ID   -
Organism   Bifidobacterium breve strain JTL     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 682540..694408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQQ90_RS02730 - 684386..685909 (+) 1524 WP_042994367.1 amino acid permease -
  HQQ90_RS02735 - 685997..686260 (-) 264 WP_228550455.1 DUF1684 domain-containing protein -
  HQQ90_RS02740 - 686835..687356 (+) 522 WP_050825218.1 MarR family winged helix-turn-helix transcriptional regulator -
  HQQ90_RS02745 rcrP 687540..689408 (+) 1869 WP_042994365.1 ABC transporter ATP-binding protein Regulator
  HQQ90_RS02750 rcrQ 689540..691369 (+) 1830 WP_042994364.1 ABC transporter ATP-binding protein Regulator
  HQQ90_RS02755 - 691378..692319 (-) 942 WP_042994362.1 FAD:protein FMN transferase -
  HQQ90_RS02760 - 692424..693842 (+) 1419 WP_042994360.1 MFS transporter -

Sequence

Protein


Download         Length: 622 a.a.        Molecular weight: 67995.60 Da        Isoelectric Point: 5.0291

>NTDB_id=449278 HQQ90_RS02745 WP_042994365.1 687540..689408(+) (rcrP) [Bifidobacterium breve strain JTL]
MFRIMKYLSKAEIGQMLIALVSIVGQIWFDLELPDYMSDITTLVETPGSAMADIWTAGGKMLLISLGSVCCAIITGYIAA
RVASSFGQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDITQIQMFITMGLQLIVKSPIMAVWAVCKIAGEGFEWTVA
TAIAVVILLVAVVILMALVMPKFKAMQGLTDNINLVARENLTGLRVVRAYNAEDYQESKFTKANKDLTDTQLFTNRTMAI
MMPLMNTVMNGLMLAVYWIGAYLIEAAELTDKLTVFSNMVVFSSYSVQVIMSFLLMSMVFVLWPRADVSAQRVMEVLNTE
PIVKNGTKRVADIAKTGQTGTVEFKDVSFTYPDSREAMLQGINFKAEKGQTVAFIGSTGSGKSSLINLVPRFYDVSAGQV
LVDGVDVRDYDMVALRDKIGYVPQRSVLFKGTVAGNISYGDKPGENDAVELADTSTPAGRKREALQLAADAANDGKLTDE
QMSRVKAAADVAQASEFVNRMDGGFDSPIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDRAVRDALAE
EAKDSTKLIVAQRIGTIMNADRIVVLDEGKVVGQGTHRELLENCEVYRQIAESQLSESELTA

Nucleotide


Download         Length: 1869 bp        

>NTDB_id=449278 HQQ90_RS02745 WP_042994365.1 687540..689408(+) (rcrP) [Bifidobacterium breve strain JTL]
ATGTTTCGCATCATGAAATACCTCTCCAAAGCGGAGATCGGTCAGATGCTTATCGCCTTAGTGTCCATCGTCGGGCAAAT
CTGGTTCGACCTCGAACTGCCCGATTATATGTCAGACATCACCACCCTGGTCGAGACGCCGGGCAGCGCAATGGCGGACA
TCTGGACCGCCGGCGGCAAGATGCTGCTGATCTCGCTCGGCTCGGTCTGCTGCGCCATCATCACCGGCTATATCGCGGCG
CGCGTGGCCTCCAGCTTCGGCCAGCGCCTACGCTCGCTCGAATTCCGTAAGGTCGAATCCTTCGGCCCGGCCGAAATGAG
CAAGTTCTCCACGGCCAGCCTCATCACCCGCTCCACCAACGACATCACGCAAATCCAGATGTTCATCACCATGGGTCTGC
AGCTCATTGTCAAGTCGCCGATCATGGCCGTGTGGGCTGTCTGCAAGATTGCCGGCGAGGGCTTCGAATGGACGGTCGCC
ACGGCCATAGCGGTCGTGATTCTGCTGGTCGCTGTCGTAATCCTCATGGCACTGGTCATGCCGAAGTTCAAGGCCATGCA
GGGGCTCACCGATAACATCAACCTCGTGGCCCGCGAGAATCTCACTGGTCTGCGGGTGGTGCGCGCCTACAACGCCGAGG
ACTACCAGGAGTCCAAATTCACCAAGGCCAACAAGGATCTGACCGATACGCAGCTGTTCACCAACCGCACCATGGCCATC
ATGATGCCGCTGATGAACACGGTGATGAACGGCCTTATGCTCGCCGTCTACTGGATTGGCGCCTACCTGATCGAGGCCGC
CGAGCTTACCGACAAGCTCACCGTGTTCTCCAACATGGTGGTGTTCTCCAGCTACTCCGTGCAGGTGATTATGAGCTTCC
TGCTGATGAGCATGGTATTCGTGCTTTGGCCGCGCGCCGACGTGTCCGCACAGCGCGTGATGGAAGTGTTGAACACCGAG
CCGATTGTGAAAAACGGCACCAAGCGCGTGGCCGATATCGCAAAGACCGGGCAGACGGGCACTGTGGAATTCAAGGACGT
GAGCTTCACCTACCCGGATTCGCGCGAGGCCATGCTGCAGGGCATCAACTTCAAAGCCGAGAAGGGCCAGACCGTGGCGT
TCATCGGCTCTACCGGCTCGGGCAAGTCGTCGCTGATTAATCTCGTGCCGCGCTTCTACGACGTGTCCGCCGGGCAAGTG
CTCGTCGACGGTGTGGACGTGCGCGACTATGACATGGTCGCCCTACGCGACAAGATCGGCTACGTGCCGCAGCGCTCCGT
ATTGTTCAAGGGCACCGTGGCCGGCAATATCAGCTATGGCGACAAGCCCGGCGAGAACGACGCGGTCGAACTCGCGGATA
CCTCTACTCCCGCCGGCCGTAAGCGTGAGGCGCTTCAGCTGGCCGCCGATGCCGCCAACGACGGCAAGTTGACAGACGAA
CAGATGAGCCGTGTCAAGGCCGCTGCCGACGTGGCCCAGGCCAGCGAATTCGTCAACCGCATGGACGGCGGATTCGATTC
GCCGATCGCACAAGGCGGCTCGAACGTGTCCGGTGGCCAGAAGCAGCGTCTGTCCATCGCCCGCGCCGTCTACCGTCATC
CGGAAATCCTGATTTTCGATGACTCGTTCTCTGCGCTCGACTTCAAAACCGACCGTGCGGTGCGAGACGCGCTCGCCGAG
GAAGCCAAGGATTCCACCAAGCTCATCGTGGCCCAGCGCATCGGCACGATCATGAACGCCGATCGCATCGTGGTGCTTGA
CGAGGGCAAGGTCGTGGGCCAAGGCACGCATAGGGAGTTGCTCGAGAACTGCGAAGTGTACCGACAGATTGCCGAATCCC
AGCTGAGTGAATCGGAACTGACTGCGTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(60-292)

ABC transporter (ABC_tran)

(359-542)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.576

100

0.494