Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | FOC88_RS07300 | Genome accession | NZ_CP053934 |
| Coordinates | 1276209..1276988 (+) | Length | 259 a.a. |
| NCBI ID | WP_000421288.1 | Uniprot ID | Q81WK7 |
| Organism | Bacillus thuringiensis strain FDAARGOS_794 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1237384..1311311 | 1276209..1276988 | within | 0 |
Gene organization within MGE regions
Location: 1237384..1311311
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOC88_RS07110 (FOC88_07110) | rsmB | 1237542..1238876 (+) | 1335 | WP_001249680.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
| FOC88_RS07115 (FOC88_07115) | rlmN | 1238881..1239969 (+) | 1089 | WP_000450543.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| FOC88_RS07120 (FOC88_07120) | - | 1239974..1240726 (+) | 753 | WP_000648699.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| FOC88_RS07125 (FOC88_07125) | prkC | 1240735..1242708 (+) | 1974 | WP_042510898.1 | serine/threonine protein kinase PrkC | - |
| FOC88_RS07130 (FOC88_07130) | rsgA | 1242977..1243858 (+) | 882 | WP_001113935.1 | ribosome small subunit-dependent GTPase A | - |
| FOC88_RS07135 (FOC88_07135) | rpe | 1243861..1244505 (+) | 645 | WP_000589966.1 | ribulose-phosphate 3-epimerase | - |
| FOC88_RS07140 (FOC88_07140) | - | 1244605..1245285 (+) | 681 | WP_025388434.1 | thiamine diphosphokinase | - |
| FOC88_RS07145 (FOC88_07145) | spoVM | 1245352..1245432 (+) | 81 | WP_001213599.1 | stage V sporulation protein SpoVM | - |
| FOC88_RS07150 (FOC88_07150) | rpmB | 1245506..1245694 (-) | 189 | WP_000124776.1 | 50S ribosomal protein L28 | - |
| FOC88_RS07155 (FOC88_07155) | - | 1246073..1246435 (+) | 363 | WP_000021109.1 | Asp23/Gls24 family envelope stress response protein | - |
| FOC88_RS07160 (FOC88_07160) | - | 1246458..1248134 (+) | 1677 | WP_000027136.1 | DAK2 domain-containing protein | - |
| FOC88_RS07165 (FOC88_07165) | recG | 1248424..1250472 (+) | 2049 | WP_001006884.1 | ATP-dependent DNA helicase RecG | - |
| FOC88_RS07170 (FOC88_07170) | fapR | 1250561..1251154 (+) | 594 | WP_000747352.1 | transcription factor FapR | - |
| FOC88_RS07175 (FOC88_07175) | plsX | 1251151..1252143 (+) | 993 | WP_000684108.1 | phosphate acyltransferase PlsX | - |
| FOC88_RS07180 (FOC88_07180) | fabD | 1252158..1253102 (+) | 945 | WP_000516948.1 | ACP S-malonyltransferase | - |
| FOC88_RS07185 (FOC88_07185) | fabG | 1253102..1253842 (+) | 741 | WP_000911782.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| FOC88_RS07190 (FOC88_07190) | acpP | 1253912..1254145 (+) | 234 | WP_000786062.1 | acyl carrier protein | - |
| FOC88_RS07195 (FOC88_07195) | rncS | 1254204..1254941 (+) | 738 | WP_001146873.1 | ribonuclease III | - |
| FOC88_RS07200 (FOC88_07200) | smc | 1255088..1258657 (+) | 3570 | WP_000478986.1 | chromosome segregation protein SMC | - |
| FOC88_RS07205 (FOC88_07205) | ftsY | 1258673..1259662 (+) | 990 | WP_000007650.1 | signal recognition particle-docking protein FtsY | - |
| FOC88_RS07210 (FOC88_07210) | - | 1259796..1260128 (+) | 333 | WP_000891062.1 | putative DNA-binding protein | - |
| FOC88_RS07215 (FOC88_07215) | ffh | 1260141..1261490 (+) | 1350 | WP_000863458.1 | signal recognition particle protein | - |
| FOC88_RS07220 (FOC88_07220) | rpsP | 1261591..1261863 (+) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| FOC88_RS07225 (FOC88_07225) | - | 1261878..1262105 (+) | 228 | WP_000737398.1 | KH domain-containing protein | - |
| FOC88_RS07230 (FOC88_07230) | rimM | 1262226..1262741 (+) | 516 | WP_000170268.1 | ribosome maturation factor RimM | - |
| FOC88_RS07235 (FOC88_07235) | trmD | 1262741..1263475 (+) | 735 | WP_000686892.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| FOC88_RS07240 (FOC88_07240) | rplS | 1263622..1263966 (+) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| FOC88_RS07245 (FOC88_07245) | lepB | 1264068..1264619 (+) | 552 | WP_000711857.1 | signal peptidase I | - |
| FOC88_RS07250 (FOC88_07250) | ylqF | 1264640..1265530 (+) | 891 | WP_000236696.1 | ribosome biogenesis GTPase YlqF | - |
| FOC88_RS07255 (FOC88_07255) | rnhB | 1265582..1266355 (+) | 774 | WP_001174720.1 | ribonuclease HII | - |
| FOC88_RS07260 (FOC88_07260) | sucC | 1266549..1267709 (+) | 1161 | WP_001020796.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| FOC88_RS07265 (FOC88_07265) | sucD | 1267730..1268632 (+) | 903 | WP_000115178.1 | succinate--CoA ligase subunit alpha | - |
| FOC88_RS07270 (FOC88_07270) | dprA | 1268720..1269589 (+) | 870 | WP_000818033.1 | DNA-processing protein DprA | - |
| FOC88_RS07275 (FOC88_07275) | topA | 1269734..1271812 (+) | 2079 | WP_001286969.1 | type I DNA topoisomerase | - |
| FOC88_RS07280 (FOC88_07280) | trmFO | 1271863..1273167 (+) | 1305 | WP_001991958.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| FOC88_RS07285 (FOC88_07285) | xerC | 1273233..1274132 (+) | 900 | WP_001101227.1 | tyrosine recombinase XerC | - |
| FOC88_RS07290 (FOC88_07290) | hslV | 1274175..1274717 (+) | 543 | WP_000526272.1 | ATP-dependent protease proteolytic subunit HslV | - |
| FOC88_RS07295 (FOC88_07295) | hslU | 1274740..1276131 (+) | 1392 | WP_000550088.1 | ATP-dependent protease ATPase subunit HslU | - |
| FOC88_RS07300 (FOC88_07300) | codY | 1276209..1276988 (+) | 780 | WP_000421288.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| FOC88_RS07305 (FOC88_07305) | rpsB | 1277339..1278040 (+) | 702 | WP_000111483.1 | 30S ribosomal protein S2 | - |
| FOC88_RS07310 (FOC88_07310) | tsf | 1278144..1279031 (+) | 888 | WP_001018581.1 | translation elongation factor Ts | - |
| FOC88_RS07315 (FOC88_07315) | pyrH | 1279098..1279820 (+) | 723 | WP_000042663.1 | UMP kinase | - |
| FOC88_RS07320 (FOC88_07320) | frr | 1279823..1280380 (+) | 558 | WP_000531503.1 | ribosome recycling factor | - |
| FOC88_RS07325 (FOC88_07325) | uppS | 1280466..1281242 (+) | 777 | WP_000971301.1 | isoprenyl transferase | - |
| FOC88_RS07330 (FOC88_07330) | cdsA | 1281260..1282051 (+) | 792 | WP_000813583.1 | phosphatidate cytidylyltransferase | - |
| FOC88_RS07335 (FOC88_07335) | dxr | 1282075..1283217 (+) | 1143 | WP_000790359.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| FOC88_RS07340 (FOC88_07340) | rseP | 1283234..1284490 (+) | 1257 | WP_001090229.1 | RIP metalloprotease RseP | - |
| FOC88_RS07345 (FOC88_07345) | - | 1284600..1286300 (+) | 1701 | WP_042510899.1 | proline--tRNA ligase | - |
| FOC88_RS07350 (FOC88_07350) | - | 1286425..1290726 (+) | 4302 | WP_000059985.1 | PolC-type DNA polymerase III | - |
| FOC88_RS07355 (FOC88_07355) | rimP | 1291059..1291529 (+) | 471 | WP_000359097.1 | ribosome maturation factor RimP | - |
| FOC88_RS07360 (FOC88_07360) | nusA | 1291547..1292653 (+) | 1107 | WP_000102609.1 | transcription termination factor NusA | - |
| FOC88_RS07365 (FOC88_07365) | - | 1292665..1292937 (+) | 273 | WP_000071128.1 | YlxR family protein | - |
| FOC88_RS07370 (FOC88_07370) | - | 1292938..1293249 (+) | 312 | WP_001286523.1 | YlxQ family RNA-binding protein | - |
| FOC88_RS07375 (FOC88_07375) | infB | 1293254..1295314 (+) | 2061 | WP_000036341.1 | translation initiation factor IF-2 | - |
| FOC88_RS07380 (FOC88_07380) | - | 1295311..1295592 (+) | 282 | WP_042510900.1 | DUF503 domain-containing protein | - |
| FOC88_RS07385 (FOC88_07385) | rbfA | 1295608..1295964 (+) | 357 | WP_000776441.1 | 30S ribosome-binding factor RbfA | - |
| FOC88_RS07390 (FOC88_07390) | truB | 1296051..1296974 (+) | 924 | WP_000399337.1 | tRNA pseudouridine(55) synthase TruB | - |
| FOC88_RS07395 (FOC88_07395) | ribF | 1297018..1297989 (+) | 972 | WP_000766711.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| FOC88_RS07400 (FOC88_07400) | rpsO | 1298090..1298359 (+) | 270 | WP_001229392.1 | 30S ribosomal protein S15 | - |
| FOC88_RS07405 (FOC88_07405) | pnp | 1298520..1300658 (+) | 2139 | WP_000076750.1 | polyribonucleotide nucleotidyltransferase | - |
| FOC88_RS07410 (FOC88_07410) | - | 1300810..1301709 (+) | 900 | WP_000647529.1 | polysaccharide deacetylase family protein | - |
| FOC88_RS07415 (FOC88_07415) | - | 1301796..1303037 (+) | 1242 | WP_000592993.1 | pitrilysin family protein | - |
| FOC88_RS07420 (FOC88_07420) | - | 1303164..1303415 (+) | 252 | WP_001239752.1 | YlmC/YmxH family sporulation protein | - |
| FOC88_RS07425 (FOC88_07425) | dpaA | 1303690..1304592 (+) | 903 | WP_000954726.1 | dipicolinic acid synthetase subunit A | - |
| FOC88_RS07430 (FOC88_07430) | dpaB | 1304589..1305188 (+) | 600 | WP_001049484.1 | dipicolinate synthase subunit B | - |
| FOC88_RS07435 (FOC88_07435) | asd | 1305339..1306385 (+) | 1047 | WP_000414849.1 | aspartate-semialdehyde dehydrogenase | - |
| FOC88_RS07440 (FOC88_07440) | dapG | 1306409..1307641 (+) | 1233 | WP_000692470.1 | aspartate kinase | - |
| FOC88_RS07445 (FOC88_07445) | dapA | 1307653..1308531 (+) | 879 | WP_000564761.1 | 4-hydroxy-tetrahydrodipicolinate synthase | - |
| FOC88_RS07450 (FOC88_07450) | - | 1309298..1310968 (+) | 1671 | WP_000823085.1 | ribonuclease J | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28774.05 Da Isoelectric Point: 4.7947
>NTDB_id=449156 FOC88_RS07300 WP_000421288.1 1276209..1276988(+) (codY) [Bacillus thuringiensis strain FDAARGOS_794]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=449156 FOC88_RS07300 WP_000421288.1 1276209..1276988(+) (codY) [Bacillus thuringiensis strain FDAARGOS_794]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATAGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCATATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATAGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCATATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.081 |
100 |
0.811 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.667 |
98.456 |
0.459 |