Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   FOC88_RS04480 Genome accession   NZ_CP053934
Coordinates   762012..764348 (+) Length   778 a.a.
NCBI ID   WP_042510844.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain FDAARGOS_794     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 757012..769348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC88_RS04460 (FOC88_04460) - 758417..758833 (+) 417 WP_000704116.1 Rrf2 family transcriptional regulator -
  FOC88_RS04465 (FOC88_04465) - 758869..760014 (+) 1146 WP_000439912.1 cysteine desulfurase family protein -
  FOC88_RS04470 (FOC88_04470) mnmA 760031..761146 (+) 1116 WP_001038006.1 tRNA 2-thiouridine(34) synthase MnmA -
  FOC88_RS04475 (FOC88_04475) - 761257..761916 (+) 660 WP_000066395.1 tetratricopeptide repeat protein -
  FOC88_RS04480 (FOC88_04480) recD2 762012..764348 (+) 2337 WP_042510844.1 ATP-dependent RecD-like DNA helicase Machinery gene
  FOC88_RS04485 (FOC88_04485) - 764476..764664 (+) 189 WP_000469281.1 hypothetical protein -
  FOC88_RS04490 (FOC88_04490) - 764683..764811 (+) 129 WP_001053553.1 YrzQ family protein -
  FOC88_RS04495 (FOC88_04495) - 764847..765059 (-) 213 WP_000242546.1 hypothetical protein -
  FOC88_RS04500 (FOC88_04500) - 765236..766303 (+) 1068 WP_000793108.1 AI-2E family transporter -
  FOC88_RS04505 (FOC88_04505) - 766342..766686 (-) 345 WP_000209461.1 PH domain-containing protein -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87457.98 Da        Isoelectric Point: 5.2015

>NTDB_id=449148 FOC88_RS04480 WP_042510844.1 762012..764348(+) (recD2) [Bacillus thuringiensis strain FDAARGOS_794]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPEALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMRKDQLIRETMSLLNNQEGRVTEEDIISCIEMMQSEGKVIIEEERVYLASLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLKTLGEIEEQLNVQYAPLQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQKDRSFIGCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIISFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLASRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=449148 FOC88_RS04480 WP_042510844.1 762012..764348(+) (recD2) [Bacillus thuringiensis strain FDAARGOS_794]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAAAAAAAGTTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACGTACGACGAAAAAAAAGTGATGA
TAAACGGTCATTTTCCCCGCATGCATGAAGATGAAGTGTTTACGTTGACAGGACATTTTAAAGACCATCCGAAGTATGGG
AAACAATATTTAGTTGAAACGTTTAAGAAAGAATTGCCGCAAACAAAAGCAGGTATGGTGCAATATTTAGCGAGTGATCT
ATTTAAAGGGATAGGAAAACGCACAGCTGAAAAAATTGTGGACCATCTAGGGGAACATGCTATTTCTAAAATCATGGATG
ATCCTGAGGCTTTAAACGGTGTTGTTAACAAACAAAAAGCGCAAGAAATATATGAGACAATTGTTGAACATCAAGGATTA
GAGAAAGTAATGAGTTTTTTAAATGGTTACGGTTTTGGAACGAAGCTTTCTATTAAGATTTATCAGCAATATAAAGAGAT
GACATTAGAAGTAATTCGTAATAACCCATATCAGCTTATTGAAGAAGTGGATGGGATTGGATTTGGAAGAGCGGATGATA
TCGGACGTGCGTTAGGGATATCGGGTAATCATGATGATCGTGTACGTGCGGGATGTTTTTATACGTTAGAGAATGTATCA
TTACAACTTGGTCACGTTTATATGAGAAAAGATCAACTTATAAGAGAAACGATGTCACTTTTAAATAATCAAGAAGGAAG
AGTGACGGAGGAAGACATTATAAGCTGTATTGAAATGATGCAAAGTGAAGGGAAAGTCATCATCGAAGAAGAGCGAGTAT
ATTTGGCATCGTTATTCTATTCTGAAAAAGGTGTTGTGAAGTCTATTCGCAGGCTCATGAATCAGGAAGAAACACCTTCA
TTTCCTGAAGCAGAAGTGTTAAAGACGTTAGGTGAAATTGAAGAACAATTGAACGTACAGTATGCGCCGCTTCAGCAAGA
AGCAATTCAAACGGCACTTCATAAACCGATGATGTTATTGACAGGTGGACCAGGAACAGGAAAAACAACAGTTATTAAAG
GAATTGTTGAAATGTATGCGTCACTTCACGGGCTATCGTTAAATCCGAATGAATATAGTGATGATAATCCATTTCCGATA
CTATTAACAGCTCCAACAGGAAGAGCAGCGAAGCGAATGAGTGAATCAACAGGGCTTCCAGCTTGCACAATTCACCGTTT
ACTTGGATGGACGCCAGAAGGGTCTTTCCAGCGTAATGAAACAGATCCGGTACAAGGGAAATTACTCATTATTGATGAAT
TTTCAATGGTTGATATTTGGCTTGCAAATCAGCTGTTTAAGTCATTGCCGACTAACATTCAAGTTATCGTTGTAGGCGAT
GAAGATCAATTACCATCTGTAGGACCTGGGCAAGTATTGAAAGATTTATTAAATGCAGGTGCAGTTCCAACAGTAAAGCT
TACTGAAATTTATCGTCAAGCGGAAGGTTCATCAGTGATTCAACTTGCCCATGCGATAAAAAATGGAACGCTCCCACCAG
ATTTAGCGCAAAATCAAAAAGATCGTTCATTTATCGGCTGCACAGGAGCTCAAATTGTTGAAGTTGTTAAGAAGGTTTGC
GAAAACGCTAAGACAAAAGGGTTTAGCGCAAGAGATGTACAAGTATTGGCCCCGATGTATCGTGGACCGGCTGGTATTAA
TGTACTAAACGAAGCGTTGCAAGAAGTGTTTAATCCGAAAAGAGAAAAGAGTAAAGAAATTGCTTACGGTGATGTTGTAT
ACCGAAGAGGCGATAAAGTTTTGCAACTCGTTAATCAGCCGGAGAGCCAAGTATTTAATGGTGATATCGGCGAAATTGTT
TCGGTGTTTTATGCGAAAGAAAACGTTGAGCAACAAGATATGATTATCATTTCATTTGATGGAATTGAGGTAACATATAC
AAAACCAGATTTAAATCAAATTACACATGCTTATTGCTGTTCCATTCATAAATCGCAAGGTAGTGAGTTTCCCATTGTGA
TTATGCCGATAGTGAAAAGTTATAATCGTATGTTACGTCGTAATTTAATTTATACTGGTATTACAAGAAGTAAGAAGTTC
CTTATTATTTGCGGGGAGGAAGCTGCTTTTCAGTCTGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACGACTTTAGC
TAGCCGCTTGCAAGAATCACAAGGAGAAGTACAGATGGTAACGGTTAATGGCGAAGAGATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-657)

AAA domain (AAA_30)

(341-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.143

100

0.581