Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   FOC91_RS18315 Genome accession   NZ_CP053931
Coordinates   3260783..3261562 (+) Length   259 a.a.
NCBI ID   WP_000421288.1    Uniprot ID   Q81WK7
Organism   Bacillus cereus strain FDAARGOS_797     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3255783..3266562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC91_RS18295 (FOC91_18295) trmFO 3256437..3257741 (+) 1305 WP_003295032.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  FOC91_RS18300 (FOC91_18300) xerC 3257807..3258706 (+) 900 WP_001101227.1 tyrosine recombinase XerC -
  FOC91_RS18305 (FOC91_18305) hslV 3258749..3259291 (+) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  FOC91_RS18310 (FOC91_18310) hslU 3259314..3260705 (+) 1392 WP_000550088.1 ATP-dependent protease ATPase subunit HslU -
  FOC91_RS18315 (FOC91_18315) codY 3260783..3261562 (+) 780 WP_000421288.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  FOC91_RS18320 (FOC91_18320) rpsB 3261915..3262616 (+) 702 WP_000111483.1 30S ribosomal protein S2 -
  FOC91_RS18325 (FOC91_18325) tsf 3262720..3263607 (+) 888 WP_001018581.1 translation elongation factor Ts -
  FOC91_RS18330 (FOC91_18330) pyrH 3263674..3264396 (+) 723 WP_000042663.1 UMP kinase -
  FOC91_RS18335 (FOC91_18335) frr 3264399..3264956 (+) 558 WP_000531503.1 ribosome recycling factor -
  FOC91_RS18340 (FOC91_18340) uppS 3265042..3265818 (+) 777 WP_000971301.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28774.05 Da        Isoelectric Point: 4.7947

>NTDB_id=449131 FOC91_RS18315 WP_000421288.1 3260783..3261562(+) (codY) [Bacillus cereus strain FDAARGOS_797]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=449131 FOC91_RS18315 WP_000421288.1 3260783..3261562(+) (codY) [Bacillus cereus strain FDAARGOS_797]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCACATCTTCGAGGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q81WK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.081

100

0.811
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459