Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ST4021_RS09315 Genome accession   NZ_CP065493
Coordinates   1799144..1800412 (-) Length   422 a.a.
NCBI ID   WP_002952183.1    Uniprot ID   Q5M295
Organism   Streptococcus thermophilus strain 4021     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1794144..1805412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST4021_RS09280 (ST4021_09350) - 1795462..1795974 (-) 513 WP_011681725.1 helix-turn-helix transcriptional regulator -
  ST4021_RS09285 - 1796155..1796337 (+) 183 WP_024704268.1 hypothetical protein -
  ST4021_RS09290 (ST4021_09355) - 1796383..1797360 (+) 978 Protein_1773 replication initiation protein -
  ST4021_RS09295 (ST4021_09360) - 1797372..1797560 (+) 189 WP_000369785.1 DUF3173 domain-containing protein -
  ST4021_RS09300 (ST4021_09365) - 1797562..1798701 (+) 1140 WP_011681729.1 site-specific integrase -
  ST4021_RS09315 (ST4021_09380) rarA 1799144..1800412 (-) 1269 WP_002952183.1 replication-associated recombination protein A Machinery gene
  ST4021_RS09320 (ST4021_09385) rpmB 1800582..1800770 (+) 189 WP_002952184.1 50S ribosomal protein L28 -
  ST4021_RS09325 (ST4021_09390) - 1800897..1801163 (+) 267 WP_011681731.1 IreB family regulatory phosphoprotein -
  ST4021_RS09330 (ST4021_09395) ruvX 1801163..1801582 (+) 420 WP_011681732.1 Holliday junction resolvase RuvX -
  ST4021_RS09335 (ST4021_09400) - 1801691..1801996 (+) 306 WP_011681733.1 DUF1292 domain-containing protein -
  ST4021_RS09340 (ST4021_09405) - 1802098..1803347 (-) 1250 Protein_1781 ISL3 family transposase -
  ST4021_RS09345 (ST4021_09410) - 1803628..1805274 (+) 1647 WP_011681734.1 membrane protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46419.92 Da        Isoelectric Point: 6.8977

>NTDB_id=449096 ST4021_RS09315 WP_002952183.1 1799144..1800412(-) (rarA) [Streptococcus thermophilus strain 4021]
MPDNLALRMRPRSISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
NVLGDKERGFAFEVHLDDDALDFIATATNGDLRSAYNSLDLAVMSTPASGNGQHHITLDIVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYKAMDAALADLRKSGNLPIPRHLRDGHYAGSKALGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=449096 ST4021_RS09315 WP_002952183.1 1799144..1800412(-) (rarA) [Streptococcus thermophilus strain 4021]
ATGCCAGATAATCTTGCCTTACGCATGCGTCCACGTTCAATTTCAGAGGTGATTGGTCAGAAACATTTAGTTGGTGAAGG
TAAAATTATTCGCCGTATGGTAGAGGCGAATATGCTGTCGTCAATGATTCTCTACGGACCTCCAGGAATCGGGAAAACCT
CGATAGCCAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACTTTTAATGCCACTGTCGATAGCAAAAAACGTCTA
CAGGAAATTGCAGAAGAGGCTAAATTTTCAGGTGGTTTAGTTCTACTTCTAGATGAGATCCATCGTTTGGATAAAGCGAA
ACAAGATTTTTTGTTACCATTATTAGAGAACGGAAATATTATCATGATTGGTGCCACAACCGAGAATCCGTTTTTTTCTG
TAACACCAGCCATCCGTAGCCGTGTACAAATATTTGAGTTGGAACCACTCTCTAATGAAGATATCAAGGAAGCTATTTTG
AATGTTCTAGGGGACAAGGAGCGTGGCTTCGCCTTTGAGGTTCACTTAGATGATGATGCTCTAGATTTTATTGCGACAGC
TACTAATGGTGATTTACGATCGGCATATAATTCTTTGGATCTGGCTGTCATGTCGACACCAGCTTCAGGAAATGGTCAGC
ATCATATTACCCTAGACATAGTGGAAAATAGCTTACAACGCAGTTATATTACTATGGATAAAGACGGTGATGGGCACTAT
GATGTCCTTTCTGCCTTGCAAAAATCTATTCGAGGATCTGATGTTAATGCCAGTCTTCACTATGCGGCACGTTTGGTTGA
GGCAGGGGATTTGCCTAGTCTAGCACGTCGCTTGACTGTGATTGCCTATGAGGATATTGGTTTAGCTAATCCAGATGCAC
AAGTTCACACGGTCACAGCCTTGGAAGCTGCACAGAAAATAGGTTTTCCGGAGGCACGTATTTTGATTGCCAACGTAGTT
ATTGACTTAGCATTATCACCTAAGTCGAATTCGGCTTATAAGGCAATGGATGCTGCCCTGGCGGATCTTAGAAAGTCTGG
GAATTTACCTATTCCGCGTCATCTGAGAGATGGACACTATGCTGGAAGTAAGGCACTGGGTAATGCACAAGATTATAAGT
ATCCACATGCCTATCCTGAAAAGTGGGTTAAGCAACAATACCTTCCAGATAAATTAAGAGGAGTCAATTATTTCCAACCT
AATGAAACTGGGAAATACGAAAGAGCTCTTGGAGCTAATAAAGAACGAATCGATAAGTTATCTAGATAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M295

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.666

99.289

0.592