Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   STCNRZ302_RS08400 Genome accession   NZ_CP065489
Coordinates   1637070..1639574 (+) Length   834 a.a.
NCBI ID   WP_014608700.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CNRZ302     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1632070..1644574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STCNRZ302_RS08380 (STCNRZ302_08305) - 1634306..1634848 (-) 543 WP_002947866.1 CvpA family protein -
  STCNRZ302_RS08385 (STCNRZ302_08310) - 1634845..1635162 (-) 318 WP_002947863.1 hypothetical protein -
  STCNRZ302_RS08390 (STCNRZ302_08315) rnhC 1635476..1636366 (+) 891 WP_011681634.1 ribonuclease HIII -
  STCNRZ302_RS08395 (STCNRZ302_08320) lepB 1636385..1637008 (+) 624 WP_002947854.1 signal peptidase I -
  STCNRZ302_RS08400 (STCNRZ302_08325) recD/recD2/recDB 1637070..1639574 (+) 2505 WP_014608700.1 ATP-dependent RecD-like DNA helicase Machinery gene
  STCNRZ302_RS08405 (STCNRZ302_08330) - 1639629..1639955 (-) 327 WP_011226559.1 AzlD domain-containing protein -
  STCNRZ302_RS08410 (STCNRZ302_08335) - 1639942..1640637 (-) 696 WP_014608701.1 AzlC family ABC transporter permease -
  STCNRZ302_RS08415 (STCNRZ302_08340) tsaD 1640689..1641702 (-) 1014 WP_002951922.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  STCNRZ302_RS08420 (STCNRZ302_08345) rimI 1641702..1642115 (-) 414 WP_014621963.1 ribosomal protein S18-alanine N-acetyltransferase -
  STCNRZ302_RS08425 (STCNRZ302_08350) tsaB 1642117..1642803 (-) 687 WP_179970820.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  STCNRZ302_RS08430 (STCNRZ302_08355) - 1643067..1643297 (+) 231 WP_002947111.1 DNA-dependent RNA polymerase subunit epsilon -

Sequence

Protein


Download         Length: 834 a.a.        Molecular weight: 94207.63 Da        Isoelectric Point: 4.5933

>NTDB_id=448669 STCNRZ302_RS08400 WP_014608700.1 1637070..1639574(+) (recD/recD2/recDB) [Streptococcus thermophilus strain CNRZ302]
MQEFYFSGTIERIIFENASNFFRILLLEIDETDSDFEDYEIIVTGTMGEVMEGEDYTFWGQLTNHPKYGKQLQMTRYERS
KPSASGLIKYFSSDNFKGIGKKTAERIVEIYGEDPIDKILEDPSKLEQIPNLSKVNREAFLAKLKINYGTEQILSKLSSY
GLTPKAAAQIFNQYKEESLNLIEKYPYLLVEEVQGIGFKMADQLAERLGIASDAPERLRAALIHCLLEASMEEGDTYIEA
KSLLERTIILLESSRQIELDPALVAHQLTNIIQEDKVQNIETKIFDNTLYFAEQGIYTHLTRITKDQPDISAEDKIQASL
ERVEDELGITYDKVQKDAIIKALQSKVFILTGGPGTGKTTVINGIIKTYADLHGLDLKKSDLPIILAAPTGRAARRMNEL
TKLPSATIHRHLGLNGEDDFKTLDDYLDCDLIIIDEFSMVDTWLANQLFESISDTTQVIIVGDQDQLPSVGPGQVLADLL
QIDDLPKVSLTKIFRQSEDSTIVTLASQIRQGQLPTDFTEKKADRSYFEANANHIPQMVPKIVSAAIKSGIAAQDVQILA
PMYRGQAGINNLNTIMQDLLNPKEKANQFAFNDIFFRKNDKILHLVNDTELNVFNGDIGIITDLIPGKYTESKQDEIYMS
FDGNEVIYPRNEWNKITLAYAMSIHKSQGSEFPVVILPITRQSGRMLQRNLIYTAITRAKSKLVMLGEIAAFDYAVHNEG
AKRNTYLIQRFEQTYTQAVDKSVEKNVKNEGTDAFNQTKTENNRPSETLENKDFSENINPSQTLINTYSHPVDKSVNKPV
QTEENYRLTEENWATIDPMIGLSEDDIAAFFNNN

Nucleotide


Download         Length: 2505 bp        

>NTDB_id=448669 STCNRZ302_RS08400 WP_014608700.1 1637070..1639574(+) (recD/recD2/recDB) [Streptococcus thermophilus strain CNRZ302]
ATGCAAGAATTTTATTTTTCAGGAACTATCGAGCGCATCATTTTTGAAAATGCCAGTAATTTTTTTCGTATCCTACTCTT
AGAAATTGATGAAACTGACAGTGATTTTGAAGACTATGAAATCATTGTTACTGGAACTATGGGGGAAGTCATGGAGGGGG
AAGACTATACCTTCTGGGGTCAGCTAACCAATCACCCCAAATATGGCAAACAACTCCAAATGACTCGCTACGAGCGTTCA
AAACCCTCTGCCAGTGGCCTTATCAAATATTTCTCCAGTGATAATTTCAAAGGAATCGGTAAGAAAACGGCCGAGCGTAT
TGTCGAGATTTATGGCGAAGACCCTATTGACAAGATTCTCGAAGACCCTAGTAAATTAGAGCAGATTCCTAATCTGTCCA
AGGTAAACCGAGAAGCCTTCCTTGCAAAATTAAAAATCAACTATGGTACTGAACAAATCTTGTCAAAACTTTCCAGCTAT
GGACTCACACCAAAGGCTGCCGCACAAATTTTCAACCAATATAAGGAAGAATCACTTAACCTTATCGAAAAATATCCTTA
TCTCTTGGTAGAGGAAGTCCAGGGAATTGGATTTAAAATGGCCGATCAACTAGCCGAACGCCTAGGGATTGCTAGCGATG
CTCCTGAGCGTTTACGAGCCGCCCTAATTCACTGTCTGCTAGAAGCTAGTATGGAAGAAGGGGACACCTACATCGAAGCC
AAGTCCTTGCTTGAACGGACTATCATTCTTTTGGAAAGTTCTCGCCAGATTGAACTTGACCCTGCCTTGGTTGCTCACCA
ATTGACCAACATCATCCAAGAGGATAAGGTGCAAAATATAGAGACTAAAATTTTTGATAATACCCTATATTTTGCAGAAC
AGGGCATCTATACCCACCTAACTCGTATCACGAAAGACCAGCCTGACATCAGTGCTGAGGACAAAATCCAAGCAAGTCTT
GAAAGGGTGGAAGATGAGCTTGGTATCACCTATGACAAGGTTCAAAAAGATGCCATTATTAAAGCCCTACAAAGCAAGGT
CTTCATCCTGACAGGTGGTCCCGGAACAGGAAAAACCACTGTTATTAACGGAATTATTAAAACCTATGCTGACCTTCATG
GTTTAGACCTCAAAAAGTCTGATTTACCCATTATTTTAGCAGCGCCAACGGGACGGGCTGCTCGTCGGATGAACGAACTG
ACCAAGCTTCCTAGTGCCACTATCCATAGACATTTGGGGCTTAATGGCGAGGACGATTTCAAGACCTTAGATGACTATCT
TGATTGCGATTTGATTATCATCGATGAGTTCTCTATGGTTGATACTTGGTTGGCCAATCAACTCTTCGAAAGCATTTCCG
ATACTACTCAAGTAATCATTGTAGGTGACCAAGATCAGCTACCTTCTGTAGGCCCTGGCCAAGTCTTAGCTGACCTTTTG
CAGATTGATGACTTGCCTAAGGTTTCCCTAACCAAAATTTTCAGACAATCTGAGGATTCCACTATTGTTACCTTAGCTAG
CCAGATACGCCAAGGCCAACTACCCACTGATTTCACAGAGAAAAAAGCTGACCGATCATACTTTGAGGCTAATGCTAACC
ATATTCCACAGATGGTCCCTAAAATTGTCTCTGCTGCTATTAAAAGTGGGATCGCTGCTCAGGATGTACAGATTCTGGCC
CCCATGTACCGGGGACAGGCTGGTATCAACAATCTCAATACCATTATGCAGGATCTACTTAATCCCAAAGAAAAAGCCAA
TCAATTTGCCTTTAATGATATTTTCTTCCGTAAGAATGACAAGATTCTCCACCTGGTCAACGATACAGAACTCAATGTCT
TCAATGGCGATATCGGAATCATTACTGATCTCATACCTGGTAAATATACTGAAAGTAAGCAAGATGAAATTTACATGTCC
TTCGATGGCAATGAGGTTATCTATCCTCGTAACGAATGGAATAAGATTACTCTGGCCTATGCCATGTCTATACACAAATC
CCAAGGGAGTGAATTCCCAGTCGTTATCCTTCCCATCACACGCCAAAGTGGGCGTATGCTTCAACGTAACCTCATCTACA
CCGCTATCACACGCGCCAAGAGTAAACTGGTCATGTTGGGGGAAATCGCAGCCTTCGATTATGCCGTTCACAACGAGGGG
GCCAAACGTAATACCTACCTCATCCAACGTTTTGAACAAACTTATACACAAGCTGTTGATAAGTCTGTCGAAAAGAATGT
TAAAAACGAGGGAACAGACGCCTTCAATCAAACAAAAACGGAAAACAATAGACCCTCAGAAACCCTTGAAAACAAAGACT
TCTCGGAAAATATCAATCCATCCCAAACTCTTATTAACACTTATTCACATCCTGTGGATAAGTCTGTTAACAAACCTGTG
CAAACAGAAGAAAACTATCGTTTAACTGAAGAAAATTGGGCAACTATCGACCCAATGATAGGTCTCAGCGAAGACGATAT
TGCAGCCTTTTTTAACAACAACTAG

Domains

Predicted by InterProScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-638)

Helix-hairpin-helix containing domain (HHH_RecD2)

(147-237)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-705)

AAA domain (AAA_30)

(331-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

44.8

89.928

0.403