Detailed information NTG0448582

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: STAVA1121_RS09335
• Genome accession: NZ_CP065488
• Coordinates: 1768677..1769945 (-)
• Length: 422 a.a.
• NCBI ID: WP_002952183.1
• Uniprot ID: Q5M295
• Organism: Streptococcus thermophilus strain AVA1121
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1763677..1774945

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STAVA1121_RS09310	-	1764430..1765137 (+)	708	WP_347131273.1	hypothetical protein	-
STAVA1121_RS09315 (STAVA1121_09190)	-	1765179..1766588 (+)	1410	WP_347131274.1	hypothetical protein	-
STAVA1121_RS09320 (STAVA1121_09195)	-	1766593..1768161 (+)	1569	WP_002948640.1	ABC transporter ATP-binding protein	-
STAVA1121_RS09335 (STAVA1121_09210)	rarA	1768677..1769945 (-)	1269	WP_002952183.1	replication-associated recombination protein A	Machinery gene
STAVA1121_RS09340 (STAVA1121_09215)	rpmB	1770116..1770304 (+)	189	WP_002952184.1	50S ribosomal protein L28	-
STAVA1121_RS09345 (STAVA1121_09220)	-	1770431..1770697 (+)	267	WP_002952186.1	IreB family regulatory phosphoprotein	-
STAVA1121_RS09350 (STAVA1121_09225)	ruvX	1770697..1771116 (+)	420	WP_002952187.1	Holliday junction resolvase RuvX	-
STAVA1121_RS09355 (STAVA1121_09230)	-	1771225..1771530 (+)	306	WP_002952188.1	DUF1292 domain-containing protein	-
STAVA1121_RS09360 (STAVA1121_09235)	-	1771743..1773389 (+)	1647	WP_096811708.1	hypothetical protein	-

Sequence

Protein

• Length: 422 a.a.
• Molecular weight: 46419.92 Da
• Isoelectric Point: 6.8977

>NTDB_id=448582 STAVA1121_RS09335 WP_002952183.1 1768677..1769945(-) (rarA) [Streptococcus thermophilus strain AVA1121]
MPDNLALRMRPRSISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
NVLGDKERGFAFEVHLDDDALDFIATATNGDLRSAYNSLDLAVMSTPASGNGQHHITLDIVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYKAMDAALADLRKSGNLPIPRHLRDGHYAGSKALGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR

Nucleotide

• Length: 1269 bp

>NTDB_id=448582 STAVA1121_RS09335 WP_002952183.1 1768677..1769945(-) (rarA) [Streptococcus thermophilus strain AVA1121]
ATGCCAGATAATCTTGCTTTACGCATGCGTCCACGTTCAATTTCAGAGGTGATTGGTCAGAAGCATTTAGTTGGTGAAGG
TAAAATTATTCGCCGTATGGTAGAGGCGAATATGCTGTCGTCAATGATTCTCTACGGACCTCCAGGAATCGGGAAAACCT
CGATAGCCAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACTTTTAATGCCACTGTCGACAGCAAAAAACGTCTA
CAGGAAATTGCAGAAGAGGCTAAATTTTCAGGTGGTTTAGTTCTACTTCTAGATGAGATCCATCGTTTGGATAAAGCGAA
ACAAGATTTTTTGTTACCATTATTAGAGAACGGAAATATTATCATGATTGGTGCCACAACCGAGAATCCGTTTTTTTCTG
TAACACCAGCCATCCGTAGCCGTGTACAAATATTTGAGTTGGAACCACTCTCTAATGAAGATATCAAGGAAGCTATTTTG
AATGTTCTAGGGGACAAGGAGCGTGGCTTCGCCTTTGAGGTTCACTTAGATGATGATGCTCTAGATTTTATTGCGACAGC
TACTAATGGTGATTTACGATCGGCATATAATTCTTTGGATCTGGCTGTCATGTCGACACCAGCTTCAGGAAATGGGCAGC
ATCATATTACCTTAGACATAGTGGAAAATAGCTTACAACGCAGTTATATTACTATGGATAAAGACGGTGATGGGCACTAT
GATGTCCTTTCTGCCTTGCAAAAATCTATTCGAGGATCTGATGTTAATGCCAGTCTTCACTATGCGGCACGTTTGGTTGA
GGCAGGGGATTTGCCTAGTCTAGCACGTCGCTTGACTGTGATTGCCTATGAGGATATTGGTTTAGCTAATCCAGATGCAC
AAGTTCACACGGTCACAGCCTTGGAAGCTGCACAGAAAATAGGTTTTCCGGAGGCACGTATTTTGATTGCCAACGTAGTT
ATTGACTTAGCATTATCACCTAAGTCGAATTCGGCTTATAAGGCAATGGATGCTGCCCTGGCGGATCTTAGAAAGTCTGG
GAATTTACCTATTCCGCGTCATCTGAGAGATGGACACTATGCTGGAAGTAAGGCACTGGGTAATGCACAAGATTATAAGT
ATCCACATGCCTATCCTGAAAAGTGGGTTAAGCAACAATACCTTCCAGATAAATTAAGAGGAGTCAATTATTTCCAACCT
AATGAAACTGGGAAATACGAAAGAGCTCTTGGAGCTAATAAAGAACGAATCGATAAGTTATCTAGATAA

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (173-251)

• ATPase family associated with various cellular activities (AAA) (AAA) (42-144)

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-415)

3D structure

• AlphaFold DB: Q5M295

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	59.666	99.289	0.592