Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   BMWSH_RS03320 Genome accession   NC_017138
Coordinates   656382..658739 (+) Length   785 a.a.
NCBI ID   WP_014458149.1    Uniprot ID   A0A8D3WV14
Organism   Priestia megaterium WSH-002     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 651382..663739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMWSH_RS03300 (BMWSH_0626) cymR 652739..653155 (+) 417 WP_013059297.1 cysteine metabolism transcriptional regulator CymR -
  BMWSH_RS03305 (BMWSH_0627) - 653179..654321 (+) 1143 WP_042991874.1 cysteine desulfurase family protein -
  BMWSH_RS03310 (BMWSH_0628) mnmA 654428..655540 (+) 1113 WP_014458148.1 tRNA 2-thiouridine(34) synthase MnmA -
  BMWSH_RS03315 (BMWSH_0629) - 655698..656357 (+) 660 WP_013085089.1 lipopolysaccharide assembly protein LapB -
  BMWSH_RS03320 (BMWSH_0630) recD2 656382..658739 (+) 2358 WP_014458149.1 ATP-dependent RecD-like DNA helicase Machinery gene
  BMWSH_RS03325 (BMWSH_0631) - 658881..659072 (+) 192 WP_013059292.1 hypothetical protein -
  BMWSH_RS25800 (BMWSH_0632) - 659098..659232 (+) 135 WP_013059291.1 YrzQ family protein -
  BMWSH_RS03330 (BMWSH_0633) - 659347..660408 (+) 1062 WP_013059290.1 AI-2E family transporter -
  BMWSH_RS03335 (BMWSH_0635) alaS 660797..663430 (+) 2634 WP_014458153.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 88805.18 Da        Isoelectric Point: 5.0229

>NTDB_id=44858 BMWSH_RS03320 WP_014458149.1 656382..658739(+) (recD2) [Priestia megaterium WSH-002]
MNEEQVNPSQPERHYISGTSIVTVFHNEENLYNVTRIRIKKTNLEIEDKETVVTGYFPKLNEDEVYTFYGDFKEHPKFGL
QFHVEQFKKELPQSRQGVVQYLSSDLFHGIGKKTAENIVDALGERAIFRILQNESVLKEVPRLSADKAEALVTQLREHQG
LEEVMVKLTDLGFGPQLSMKIFQAYKQEALEIVQNNPYQLVEDIQGIGFSRADELGKRLGMATNHPDRLRAGILYVIEQE
CNQMGHVYVTADQLYGKTAELLRKSRHENLSEMDLTREVDALKADKKLIIQDEKIYFPPLFYAEKGLVKAIQTIMAQTQY
EEQFPESEFLLALGELEERLDVQYAPSQRKGIQTALMSPMLLLTGGPGTGKTTVIKGIVELYAELHGCSLNPGDYKKDEA
FPVLLVAPTGRAAKRMSEATGLPAVTIHRLLKWNGQEGFDHNEENPIDGKLLIVDEVSMVDLWLAHQLFKSLPANLQVIL
VGDEDQLPSVGPGQVLKDLLSSEVVPTVRLTDVYRQAEGSSIIDLAHEIKKGKLPEDLSRQQGDRSFIRCQGQHITNVVQ
QVCGNALKKGYTAKDIQVLAPMYKGPAGIDKLNEVLQELFNPASEQRRELKHGDITYRVGDKVLQLVNQPDSNVFNGDMG
EIVSVFFAKENTEKQDMLVISYEGNEVTYTKQDFNQITHAYCCSIHKSQGSEFPIVVLPIVKSYYRMLRRNLLYTAVTRS
KQFLILCGEDEAFQLGVSRNEDSVRQTNLQPLLRESLDNDIEDPEIPFMKDANIGMENVTPYDFM

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=44858 BMWSH_RS03320 WP_014458149.1 656382..658739(+) (recD2) [Priestia megaterium WSH-002]
ATGAACGAAGAACAAGTGAACCCTTCACAGCCAGAACGTCATTATATAAGCGGCACGTCAATTGTAACGGTCTTTCATAA
CGAAGAAAACTTATATAACGTTACGCGGATACGGATCAAAAAAACAAATTTAGAGATTGAAGATAAAGAAACGGTTGTTA
CAGGCTATTTTCCTAAGTTGAATGAAGATGAAGTATACACGTTTTACGGGGACTTCAAAGAGCATCCAAAGTTCGGCCTG
CAGTTTCATGTTGAACAGTTTAAAAAAGAACTTCCGCAATCAAGGCAAGGGGTTGTTCAGTACCTATCTAGCGATTTATT
TCACGGAATCGGTAAAAAAACCGCTGAAAATATTGTGGACGCCCTAGGAGAACGCGCTATCTTTCGTATTTTACAAAATG
AGTCTGTGCTAAAAGAGGTGCCGAGGCTTTCAGCCGACAAGGCAGAAGCTTTAGTCACTCAGCTTCGTGAACATCAAGGG
TTAGAAGAAGTAATGGTAAAGCTGACGGACCTCGGGTTTGGACCGCAGCTTTCGATGAAGATTTTCCAAGCGTACAAACA
AGAAGCGCTTGAAATTGTTCAAAATAACCCTTATCAGCTCGTAGAAGATATTCAAGGGATTGGTTTTAGCCGGGCCGATG
AACTTGGAAAGAGACTTGGTATGGCAACCAATCATCCTGATCGTTTGCGTGCGGGTATTTTATACGTCATTGAGCAAGAA
TGCAATCAAATGGGACATGTATACGTCACGGCAGATCAGCTGTATGGAAAAACAGCAGAGCTTCTTCGGAAAAGCAGGCA
TGAGAATCTGTCTGAAATGGATCTTACAAGAGAAGTGGACGCATTAAAAGCAGACAAAAAGCTTATTATTCAAGACGAAA
AAATTTATTTTCCTCCCCTTTTTTATGCTGAAAAAGGACTGGTTAAAGCTATTCAAACAATTATGGCTCAAACGCAGTAC
GAAGAGCAGTTTCCAGAATCAGAATTTTTACTAGCTCTGGGTGAGCTAGAAGAGCGATTAGACGTGCAATATGCACCGTC
TCAGCGCAAGGGTATACAAACCGCTTTAATGTCTCCAATGCTTCTTTTAACAGGTGGACCAGGTACAGGGAAAACAACAG
TTATTAAAGGAATAGTCGAACTCTATGCAGAACTTCATGGATGTTCGTTAAATCCAGGGGACTATAAAAAAGATGAAGCT
TTTCCTGTTTTACTTGTCGCACCTACTGGACGAGCTGCTAAACGAATGAGCGAAGCGACGGGACTTCCGGCGGTTACGAT
TCACAGATTATTAAAATGGAACGGACAAGAAGGATTTGATCATAATGAGGAGAATCCAATTGACGGAAAATTACTGATTG
TGGATGAAGTATCAATGGTAGATTTGTGGCTTGCTCATCAGCTGTTTAAATCTCTTCCTGCTAATTTACAGGTTATTTTA
GTTGGAGACGAAGACCAGCTTCCTTCAGTAGGTCCGGGACAGGTGTTAAAAGATTTACTGAGTTCAGAAGTAGTTCCTAC
CGTCCGCCTGACGGATGTATACAGGCAAGCGGAAGGATCGTCAATTATTGATTTGGCTCATGAAATAAAAAAAGGAAAGC
TTCCGGAAGACTTATCGAGGCAGCAAGGAGATCGTTCCTTTATTCGTTGTCAAGGACAGCACATCACAAACGTCGTGCAA
CAAGTTTGCGGGAATGCGTTAAAAAAAGGCTATACGGCTAAAGATATTCAAGTTTTAGCTCCTATGTATAAAGGTCCTGC
AGGGATTGATAAACTGAATGAAGTTCTTCAGGAATTATTTAACCCGGCTTCTGAGCAAAGAAGAGAGCTTAAGCACGGAG
ATATTACGTACCGAGTCGGAGATAAAGTGCTGCAGCTTGTAAATCAGCCGGATAGCAACGTATTTAACGGAGACATGGGA
GAAATCGTCTCGGTTTTCTTTGCCAAAGAAAATACGGAAAAACAGGATATGCTGGTTATTTCATATGAAGGAAATGAAGT
AACTTACACAAAGCAAGACTTTAATCAAATAACCCATGCATACTGCTGTTCCATCCATAAATCACAGGGAAGTGAATTTC
CTATTGTTGTACTTCCGATTGTCAAAAGCTATTACCGAATGCTGCGACGCAATTTGCTTTATACCGCCGTTACGCGAAGT
AAACAATTTTTAATTTTATGCGGCGAAGACGAAGCGTTTCAGCTTGGAGTCAGCCGAAATGAAGACAGCGTCCGACAAAC
GAACCTACAGCCCTTGCTTCGAGAAAGCTTAGATAACGATATAGAAGATCCCGAAATTCCATTTATGAAAGATGCAAATA
TTGGGATGGAAAACGTTACGCCGTATGATTTTATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(344-551)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(679-727)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(592-659)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

63.939

99.618

0.637

Multiple sequence alignment