Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   STAVA1121_RS03680 Genome accession   NZ_CP065488
Coordinates   681698..682291 (-) Length   197 a.a.
NCBI ID   WP_347131484.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain AVA1121     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 676698..687291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAVA1121_RS03665 (STAVA1121_03605) holA 678449..679483 (+) 1035 WP_002946639.1 DNA polymerase III subunit delta -
  STAVA1121_RS03670 (STAVA1121_03610) sodA 679578..680183 (+) 606 WP_011680996.1 superoxide dismutase SodA -
  STAVA1121_RS03675 (STAVA1121_03615) - 680280..681658 (+) 1379 Protein_663 serine hydrolase -
  STAVA1121_RS03680 (STAVA1121_03620) cclA/cilC 681698..682291 (-) 594 WP_347131484.1 prepilin peptidase Machinery gene
  STAVA1121_RS03685 (STAVA1121_03625) - 682453..682974 (+) 522 WP_347131485.1 Dps family protein -
  STAVA1121_RS03690 (STAVA1121_03630) - 683063..683500 (+) 438 WP_347131487.1 Fur family transcriptional regulator -
  STAVA1121_RS03695 (STAVA1121_03635) - 683611..683817 (+) 207 WP_002950395.1 YqgQ family protein -
  STAVA1121_RS03700 (STAVA1121_03640) - 683810..684778 (+) 969 WP_082308904.1 ROK family glucokinase -
  STAVA1121_RS03705 (STAVA1121_03645) typA 684916..686763 (+) 1848 WP_096811373.1 translational GTPase TypA -
  STAVA1121_RS03710 (STAVA1121_03650) - 686787..687059 (+) 273 WP_002950398.1 DUF3165 family protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 22956.68 Da        Isoelectric Point: 8.3868

>NTDB_id=448520 STAVA1121_RS03680 WP_347131484.1 681698..682291(-) (cclA/cilC) [Streptococcus thermophilus strain AVA1121]
MICDRFPEKSIIFPRSHCNQCGHPLRFFEMIPILSQLFLRFKCRLCQSSIPYRYLFLELFCGGILLLYFYDYLDFGRTYL
LFFSLCLTIFDLKNKSYPLLIWILGTLPLLCLGNHYLTFSLGISLAVLSYIKRLNIGEGDFLYLASVSLIFPFSKILIAI
ELACSFGLMYFLVRKNPNETVAFVPFLFMSVLILTFM

Nucleotide


Download         Length: 594 bp        

>NTDB_id=448520 STAVA1121_RS03680 WP_347131484.1 681698..682291(-) (cclA/cilC) [Streptococcus thermophilus strain AVA1121]
TTGATTTGTGATCGTTTTCCTGAGAAGTCGATTATTTTTCCTAGAAGCCATTGCAATCAGTGTGGGCATCCGTTACGTTT
TTTCGAAATGATTCCGATCCTATCACAACTTTTCTTAAGGTTCAAATGTCGGTTATGTCAAAGCTCTATCCCATACCGTT
ACCTCTTCTTGGAATTGTTTTGTGGAGGAATACTTCTTCTTTATTTCTATGACTACCTAGATTTCGGAAGAACCTATTTG
CTTTTTTTCAGTCTTTGTCTAACTATTTTTGATTTAAAAAATAAATCATATCCCCTTCTAATTTGGATTCTTGGAACACT
ACCTCTCCTATGTTTGGGAAACCACTACCTCACTTTTAGCTTAGGAATAAGTTTAGCCGTTCTGTCATATATCAAACGTT
TAAATATTGGTGAAGGTGATTTTCTCTATTTGGCCAGTGTCTCCCTCATTTTCCCATTTTCCAAAATACTAATAGCTATT
GAACTAGCTTGCTCATTTGGGCTTATGTACTTCCTAGTACGTAAAAACCCTAATGAAACAGTCGCTTTTGTCCCATTTCT
CTTTATGAGTGTTCTAATTCTTACCTTCATGTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(2-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus pneumoniae TIGR4

39.286

99.492

0.391
  cclA/cilC Streptococcus mitis SK321

38.776

99.492

0.386
  cclA/cilC Streptococcus mitis NCTC 12261

38.265

99.492

0.381
  cclA/cilC Streptococcus pneumoniae Rx1

38.265

99.492

0.381
  cclA/cilC Streptococcus pneumoniae D39

38.265

99.492

0.381
  cclA/cilC Streptococcus pneumoniae R6

38.265

99.492

0.381