Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   STAVA1121_RS02760 Genome accession   NZ_CP065488
Coordinates   506693..508429 (+) Length   578 a.a.
NCBI ID   WP_011225637.1    Uniprot ID   Q5M5F0
Organism   Streptococcus thermophilus strain AVA1121     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 501693..513429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAVA1121_RS02710 - 502214..502348 (+) 135 WP_257739147.1 hypothetical protein -
  STAVA1121_RS02715 (STAVA1121_02665) - 502431..502682 (+) 252 WP_347131413.1 hypothetical protein -
  STAVA1121_RS02720 (STAVA1121_02670) - 502922..503167 (+) 246 WP_011226962.1 efflux RND transporter periplasmic adaptor subunit -
  STAVA1121_RS02725 (STAVA1121_02675) - 503160..503357 (+) 198 WP_347131415.1 hypothetical protein -
  STAVA1121_RS02730 - 503483..503587 (+) 105 WP_224107515.1 ABC transporter permease -
  STAVA1121_RS02735 (STAVA1121_02685) - 503700..503990 (+) 291 WP_180476840.1 FtsX-like permease family protein -
  STAVA1121_RS02740 (STAVA1121_02690) - 503987..504202 (+) 216 WP_232085721.1 hypothetical protein -
  STAVA1121_RS02745 (STAVA1121_02695) rplJ 504494..504997 (+) 504 WP_011225635.1 50S ribosomal protein L10 -
  STAVA1121_RS02750 (STAVA1121_02700) rplL 505072..505440 (+) 369 WP_011225636.1 50S ribosomal protein L7/L12 -
  STAVA1121_RS02755 (STAVA1121_02705) - 506148..506300 (+) 153 WP_176243517.1 hypothetical protein -
  STAVA1121_RS02760 (STAVA1121_02710) rcrP 506693..508429 (+) 1737 WP_011225637.1 ABC transporter ATP-binding protein Regulator
  STAVA1121_RS02765 (STAVA1121_02715) rcrQ 508442..510229 (+) 1788 WP_347131417.1 ABC transporter ATP-binding protein Regulator
  STAVA1121_RS02770 (STAVA1121_02720) queA 510327..511370 (-) 1044 WP_096811902.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  STAVA1121_RS02775 (STAVA1121_02725) - 511520..512221 (+) 702 WP_347131418.1 glucosamine-6-phosphate deaminase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64689.59 Da        Isoelectric Point: 5.7785

>NTDB_id=448512 STAVA1121_RS02760 WP_011225637.1 506693..508429(+) (rcrP) [Streptococcus thermophilus strain AVA1121]
MSYIWSYLRRYPKWLAMNFTAAILFVIANLGMPTVLARMIDEGINRGDADKLYTYAWVMFGVVLTGIVGRVLLAYAVGKL
TTTMVQVMRNDIYAKLQEYSHHEYEQIGVSSLVTRITSDAFVLMQFADQVLKVGVITPLMMVSSVFLILTTSPSLAWIVA
ISLPLLAVVVWYVAVKTRPLSEKQQATLDKINQYARENLTGLRVIRAFAREDFQEKKFASENAVYADNSSKLFKLTGLTE
PLFVQIIIAMIVAIVWFALNPLGSGTLAIGDLVAFIEYSFHALLSFLFLANLFTMYPRTAVSSERLQEIMDMPISINPNE
DGVTETDTKGYLEFDNVTFAYPGETESPVLHNISFKAKAGETIAFIGSTGSGKSSLVQLIPRFYDVTLGRILVDGVDVRD
YNLKALRRKIGFIPQKALLFTGTIGENIRYGKENASHEELNQATDVAQAKEFIESKEERYDSHLAEGGSNLSGGQKQRLS
IARAVVKRPDLYIFDDSFSALDYKTDATLRRRLKEVTQDATVLIVAQRVGTIMDADQIIVLDKGEIVGRGRHEELMESNE
IYREIANSQLNQKSLTED

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=448512 STAVA1121_RS02760 WP_011225637.1 506693..508429(+) (rcrP) [Streptococcus thermophilus strain AVA1121]
ATGTCTTATATTTGGTCTTATCTCAGGCGTTACCCTAAGTGGCTAGCGATGAATTTTACGGCAGCCATTTTATTTGTTAT
TGCTAACCTGGGTATGCCGACGGTTCTTGCTAGAATGATTGATGAGGGAATTAACCGTGGGGATGCTGACAAGCTTTATA
CCTATGCTTGGGTCATGTTTGGTGTGGTCTTAACTGGTATTGTTGGTCGTGTGCTTTTGGCCTATGCGGTTGGTAAGTTG
ACGACTACTATGGTGCAGGTCATGCGTAATGATATCTACGCCAAACTTCAGGAGTATTCACACCATGAGTACGAACAAAT
TGGGGTATCTTCTTTGGTGACTCGTATCACGTCGGATGCTTTTGTTCTCATGCAGTTTGCAGATCAAGTCCTCAAGGTGG
GTGTTATCACTCCTTTGATGATGGTTTCCAGTGTCTTTTTGATTTTGACGACAAGTCCATCTTTGGCTTGGATTGTGGCA
ATCTCCTTGCCTTTACTAGCTGTAGTTGTCTGGTATGTGGCGGTAAAAACGCGTCCGCTTTCTGAAAAGCAACAGGCAAC
TCTCGACAAGATTAACCAGTATGCTCGTGAAAATCTGACTGGACTTCGTGTCATCCGTGCTTTCGCTAGAGAAGATTTCC
AAGAGAAGAAGTTTGCCTCTGAAAATGCTGTCTATGCGGATAATTCAAGCAAGCTCTTTAAATTGACTGGTTTAACAGAG
CCACTTTTTGTACAAATTATCATCGCTATGATTGTGGCTATTGTTTGGTTTGCCCTAAATCCATTAGGTTCTGGAACTCT
GGCAATCGGGGACTTGGTTGCCTTCATTGAGTACAGTTTCCATGCACTATTATCCTTCCTCTTTCTAGCTAATCTCTTTA
CTATGTATCCTCGTACAGCGGTATCTAGTGAACGTCTGCAGGAAATTATGGATATGCCTATTTCTATCAACCCAAATGAA
GATGGGGTGACAGAGACTGATACTAAGGGATATTTGGAATTTGATAATGTGACCTTTGCCTATCCTGGTGAAACTGAGAG
TCCTGTTCTACACAATATTTCTTTTAAGGCTAAGGCAGGTGAAACTATTGCCTTTATTGGGTCTACGGGCTCAGGAAAAT
CATCACTTGTACAGTTGATTCCACGCTTTTATGATGTCACACTTGGACGTATTCTTGTGGATGGTGTGGATGTACGTGAC
TACAATCTTAAGGCTCTTCGTCGTAAGATTGGCTTTATTCCACAAAAAGCTCTACTCTTTACTGGAACTATCGGTGAAAA
TATCCGTTATGGTAAGGAAAATGCTAGTCATGAAGAATTGAATCAAGCTACGGACGTGGCTCAGGCTAAGGAATTTATTG
AAAGCAAGGAAGAACGCTATGATTCTCACTTGGCTGAGGGTGGTAGCAACCTTTCTGGGGGACAGAAGCAGCGTTTGTCA
ATTGCACGTGCGGTGGTTAAACGTCCTGATCTCTATATCTTTGATGATTCCTTCTCTGCCTTGGACTACAAGACTGATGC
GACTTTGCGCCGTCGTCTAAAAGAAGTGACTCAGGATGCGACGGTCTTGATCGTGGCTCAACGTGTGGGAACCATTATGG
ATGCAGATCAGATTATCGTTCTTGATAAGGGTGAAATTGTTGGTCGTGGCCGTCACGAAGAGCTCATGGAAAGTAATGAG
ATTTACCGTGAGATTGCTAATTCACAATTGAATCAAAAGAGTCTTACAGAAGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(17-279)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M5F0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.189

91.696

0.369