Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   STT19_RS08825 Genome accession   NZ_CP065487
Coordinates   1708380..1708673 (-) Length   97 a.a.
NCBI ID   WP_023909978.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST19     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1703380..1713673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STT19_RS08785 (STT19_08815) - 1703783..1704226 (-) 444 WP_041829335.1 hypothetical protein -
  STT19_RS08790 - 1704300..1704725 (-) 426 WP_100273189.1 CPBP family intramembrane glutamic endopeptidase -
  STT19_RS08795 - 1704682..1704957 (-) 276 WP_100273190.1 CAAX protease -
  STT19_RS08800 (STT19_08825) - 1704969..1705166 (-) 198 WP_159340988.1 helix-turn-helix transcriptional regulator -
  STT19_RS08805 (STT19_08830) - 1705414..1706607 (-) 1194 WP_084825660.1 acetate kinase -
  STT19_RS08810 (STT19_08835) comGH 1706663..1707619 (-) 957 WP_023909974.1 class I SAM-dependent methyltransferase Machinery gene
  STT19_RS08815 (STT19_08840) comGG 1707664..1707981 (-) 318 WP_023909975.1 competence type IV pilus minor pilin ComGG Machinery gene
  STT19_RS08820 (STT19_08845) comGF 1707959..1708396 (-) 438 WP_084825661.1 competence type IV pilus minor pilin ComGF Machinery gene
  STT19_RS08825 (STT19_08850) comGE 1708380..1708673 (-) 294 WP_023909978.1 competence type IV pilus minor pilin ComGE Machinery gene
  STT19_RS08830 (STT19_08855) comGD 1708645..1709073 (-) 429 WP_171815055.1 competence type IV pilus minor pilin ComGD Machinery gene
  STT19_RS08835 (STT19_08860) comGC 1709033..1709359 (-) 327 WP_023909980.1 competence type IV pilus major pilin ComGC Machinery gene
  STT19_RS08840 (STT19_08865) comGB 1709356..1710456 (-) 1101 WP_159340986.1 competence type IV pilus assembly protein ComGB Machinery gene
  STT19_RS08845 (STT19_08870) comGA 1710338..1711279 (-) 942 WP_014622005.1 competence type IV pilus ATPase ComGA Machinery gene
  STT19_RS08850 (STT19_08875) - 1711360..1711722 (-) 363 WP_023909982.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10858.77 Da        Isoelectric Point: 10.4561

>NTDB_id=448472 STT19_RS08825 WP_023909978.1 1708380..1708673(-) (comGE) [Streptococcus thermophilus strain ST19]
MVNIKRRSLRGYILIESLIAMAVLVLVSSLILEQINTNRRLMADNLHQQEVLSVATMAVQTKQDQLTLNGIAVTVKRSQQ
GITVYESGKEIIHVSKQ

Nucleotide


Download         Length: 294 bp        

>NTDB_id=448472 STT19_RS08825 WP_023909978.1 1708380..1708673(-) (comGE) [Streptococcus thermophilus strain ST19]
GTGGTAAATATAAAAAGACGATCTCTTAGAGGTTATATTCTTATTGAAAGCCTGATAGCTATGGCTGTTTTAGTACTTGT
CAGCAGTCTGATATTGGAACAAATTAATACCAACCGCAGACTAATGGCTGATAATCTCCATCAACAAGAGGTCTTGAGTG
TGGCAACAATGGCAGTTCAGACCAAGCAAGACCAGTTAACGCTGAATGGCATAGCGGTGACAGTTAAACGTAGCCAGCAA
GGTATCACGGTTTATGAATCGGGAAAGGAGATTATTCATGTATCTAAGCAGTAA

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

42.268

100

0.423
  comGE Streptococcus mutans UA159

42.268

100

0.423
  comGE Lactococcus lactis subsp. cremoris KW2

37.113

100

0.371