Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   STR1_RS09240 Genome accession   NZ_CP065486
Coordinates   1796737..1798005 (-) Length   422 a.a.
NCBI ID   WP_095559483.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain R1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1791737..1803005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STR1_RS09205 (STR1_09285) - 1793056..1793568 (-) 513 WP_014608793.1 helix-turn-helix transcriptional regulator -
  STR1_RS09210 - 1793749..1793931 (+) 183 WP_024704268.1 hypothetical protein -
  STR1_RS09215 (STR1_09290) - 1793977..1794954 (+) 978 Protein_1770 replication initiation protein -
  STR1_RS09220 (STR1_09295) - 1794966..1795154 (+) 189 WP_000369785.1 DUF3173 domain-containing protein -
  STR1_RS09225 (STR1_09300) - 1795156..1796295 (+) 1140 Protein_1772 site-specific integrase -
  STR1_RS09240 (STR1_09315) rarA 1796737..1798005 (-) 1269 WP_095559483.1 replication-associated recombination protein A Machinery gene
  STR1_RS09245 (STR1_09320) rpmB 1798175..1798363 (+) 189 WP_002952184.1 50S ribosomal protein L28 -
  STR1_RS09250 (STR1_09325) - 1798490..1798756 (+) 267 WP_011681731.1 IreB family regulatory phosphoprotein -
  STR1_RS09255 (STR1_09330) ruvX 1798756..1799175 (+) 420 WP_011681732.1 Holliday junction resolvase RuvX -
  STR1_RS09260 (STR1_09335) - 1799284..1799589 (+) 306 WP_011681733.1 DUF1292 domain-containing protein -
  STR1_RS09265 (STR1_09340) - 1799802..1801448 (+) 1647 WP_011681734.1 membrane protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46434.93 Da        Isoelectric Point: 7.0887

>NTDB_id=448370 STR1_RS09240 WP_095559483.1 1796737..1798005(-) (rarA) [Streptococcus thermophilus strain R1]
MPDNLALRMRPRSISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
NVLGDKERGFAFEVHLDDDALDFIATATNGDLRSAYNSLDLAVMSTPASGNGQHHITLDKVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYKAMDAALADLRKSGNLPIPRHLRDGHYAGSKALGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=448370 STR1_RS09240 WP_095559483.1 1796737..1798005(-) (rarA) [Streptococcus thermophilus strain R1]
ATGCCAGATAATCTTGCCTTACGCATGCGTCCACGTTCAATTTCAGAGGTGATTGGTCAGAAACATTTAGTTGGTGAAGG
TAAAATTATTCGCCGTATGGTAGAGGCGAATATGCTGTCGTCAATGATTCTCTACGGACCTCCAGGAATCGGGAAAACCT
CGATAGCCAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACTTTTAATGCCACTGTCGATAGCAAAAAACGTCTA
CAGGAAATTGCAGAAGAGGCTAAATTTTCAGGTGGTTTAGTTCTACTTCTAGATGAGATCCATCGTTTGGATAAAGCGAA
ACAAGATTTTTTGTTACCATTATTAGAGAACGGAAATATTATCATGATTGGTGCCACAACCGAGAATCCGTTTTTTTCTG
TAACACCAGCCATCCGTAGCCGTGTACAAATATTTGAGTTGGAACCACTCTCTAATGAAGATATCAAGGAAGCTATTTTG
AATGTTCTAGGGGACAAGGAGCGTGGCTTCGCCTTTGAGGTTCACTTAGATGATGATGCTCTAGATTTTATTGCGACAGC
TACTAATGGTGATTTACGATCGGCATATAATTCTTTGGATCTGGCTGTCATGTCGACACCAGCTTCAGGAAATGGGCAGC
ATCATATTACCTTAGATAAAGTGGAAAATAGCTTACAACGCAGTTATATTACTATGGATAAAGACGGTGATGGGCACTAT
GATGTCCTTTCTGCCTTGCAAAAATCTATTCGAGGATCTGATGTTAATGCCAGTCTTCACTATGCGGCACGTTTGGTTGA
GGCAGGGGATTTGCCTAGTCTAGCACGTCGCTTGACTGTGATTGCCTATGAGGATATTGGTTTAGCTAATCCAGATGCAC
AAGTTCACACGGTCACAGCCTTGGAAGCTGCACAGAAAATAGGTTTTCCGGAGGCACGTATTTTGATTGCCAACGTAGTT
ATTGACTTAGCATTATCACCTAAGTCGAATTCGGCTTATAAGGCAATGGATGCTGCCCTGGCGGATCTTAGAAAGTCTGG
GAATTTACCTATTCCGCGTCATCTGAGAGATGGACACTATGCTGGAAGTAAGGCACTGGGTAATGCACAAGATTATAAGT
ATCCACATGCCTATCCTGAAAAGTGGGTTAAGCAACAATACCTTCCAGATAAATTAAGAGGAGTCAATTATTTCCAACCT
AATGAAACTGGGAAATACGAAAGAGCTCTTGGAGCTAATAAAGAACGAATCGATAAGTTATCTAGATAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.666

99.289

0.592