Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   STMM20_RS09690 Genome accession   NZ_CP065485
Coordinates   1881764..1883032 (-) Length   422 a.a.
NCBI ID   WP_347103558.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain MM20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1876764..1888032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STMM20_RS09655 (STMM20_09635) - 1878081..1878593 (-) 513 WP_014608793.1 helix-turn-helix transcriptional regulator -
  STMM20_RS09660 - 1878774..1878956 (+) 183 WP_024704268.1 hypothetical protein -
  STMM20_RS09665 (STMM20_09640) - 1879002..1879979 (+) 978 Protein_1848 replication initiation protein -
  STMM20_RS09670 (STMM20_09645) - 1879991..1880179 (+) 189 WP_000369785.1 DUF3173 domain-containing protein -
  STMM20_RS09675 (STMM20_09650) - 1880181..1881320 (+) 1140 WP_011681729.1 site-specific integrase -
  STMM20_RS09690 (STMM20_09665) rarA 1881764..1883032 (-) 1269 WP_347103558.1 replication-associated recombination protein A Machinery gene
  STMM20_RS09695 (STMM20_09670) rpmB 1883202..1883390 (+) 189 WP_002952184.1 50S ribosomal protein L28 -
  STMM20_RS09700 (STMM20_09675) - 1883517..1883783 (+) 267 WP_347103559.1 IreB family regulatory phosphoprotein -
  STMM20_RS09705 (STMM20_09680) ruvX 1883783..1884202 (+) 420 WP_011681732.1 Holliday junction resolvase RuvX -
  STMM20_RS09710 (STMM20_09685) - 1884311..1884616 (+) 306 WP_011681733.1 DUF1292 domain-containing protein -
  STMM20_RS09715 (STMM20_09690) - 1884829..1886475 (+) 1647 WP_011681734.1 membrane protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46468.00 Da        Isoelectric Point: 7.0884

>NTDB_id=448266 STMM20_RS09690 WP_347103558.1 1881764..1883032(-) (rarA) [Streptococcus thermophilus strain MM20]
MPDNLALRMRPRSISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
NVLGDKERGFAFEVHLDDDALDFIATATNGDLRSAYNSLDLAVMSTPASGNGQHHITLDIVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSYVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYKAMDAALADLRKSGNLPIPRHLRDGHYAGSKALGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=448266 STMM20_RS09690 WP_347103558.1 1881764..1883032(-) (rarA) [Streptococcus thermophilus strain MM20]
ATGCCAGATAATCTTGCCTTACGCATGCGTCCACGTTCAATTTCAGAGGTGATTGGTCAGAAACATTTAGTTGGTGAAGG
TAAAATTATTCGCCGTATGGTAGAGGCGAATATGCTGTCGTCAATGATTCTCTACGGACCTCCAGGAATCGGGAAAACCT
CGATAGCCAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACTTTTAATGCCACTGTCGATAGCAAAAAACGTCTA
CAGGAAATTGCAGAAGAGGCTAAATTTTCAGGTGGTTTAGTTCTACTTCTAGATGAGATCCATCGTTTGGATAAAGCGAA
ACAAGATTTTTTGTTACCATTATTAGAGAACGGAAATATTATCATGATTGGTGCCACAACCGAGAATCCGTTTTTTTCTG
TAACACCAGCCATCCGTAGCCGTGTACAAATATTTGAGTTGGAACCACTCTCTAATGAAGATATCAAGGAAGCTATTTTG
AATGTTCTAGGGGACAAGGAGCGTGGCTTCGCCTTTGAGGTTCACTTAGATGATGATGCTCTAGATTTTATTGCGACAGC
TACTAATGGTGATTTACGATCGGCATATAATTCTTTGGATCTGGCTGTCATGTCGACACCAGCTTCAGGAAATGGTCAGC
ATCATATTACCCTAGACATAGTGGAAAATAGCTTACAACGCAGTTATATTACTATGGATAAAGACGGTGATGGGCACTAT
GATGTCCTTTCTGCCTTGCAAAAATCTATTCGAGGATCTTATGTTAATGCCAGTCTTCACTATGCGGCACGTTTGGTTGA
GGCAGGGGATTTGCCTAGTCTAGCACGTCGCTTGACTGTGATTGCCTATGAGGATATTGGTTTAGCTAATCCAGATGCAC
AAGTTCACACGGTCACAGCCTTGGAAGCTGCACAGAAAATAGGTTTTCCGGAGGCACGTATTTTGATTGCCAACGTAGTT
ATTGACTTAGCATTATCACCTAAGTCGAATTCGGCTTATAAGGCAATGGATGCTGCCCTGGCGGATCTTAGAAAGTCTGG
GAATTTACCTATTCCGCGTCATCTGAGAGATGGACACTATGCTGGAAGTAAGGCACTGGGTAATGCACAAGATTATAAGT
ATCCACATGCCTATCCTGAAAAGTGGGTTAAGCAACAATACCTTCCAGATAAATTAAGAGGAGTCAATTATTTCCAACCT
AATGAAACTGGGAAATACGAAAGAGCTCTTGGAGCTAATAAAGAACGAATCGATAAGTTATCTAGATAA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.427

99.289

0.59