Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   STMM20_RS07280 Genome accession   NZ_CP065485
Coordinates   1423324..1425060 (-) Length   578 a.a.
NCBI ID   WP_347103512.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain MM20     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1418324..1430060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STMM20_RS07265 (STMM20_07285) queA 1418696..1419739 (+) 1044 WP_011680873.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  STMM20_RS07275 (STMM20_07295) rcrQ 1421524..1423311 (-) 1788 WP_011680872.1 ABC transporter ATP-binding protein Regulator
  STMM20_RS07280 (STMM20_07300) rcrP 1423324..1425060 (-) 1737 WP_347103512.1 ABC transporter ATP-binding protein Regulator
  STMM20_RS07285 (STMM20_07305) - 1426080..1427255 (+) 1176 Protein_1402 IS256-like element IS1191 family transposase -
  STMM20_RS07290 (STMM20_07310) - 1427319..1429187 (-) 1869 WP_347103513.1 SAG1250 family conjugative relaxase -
  STMM20_RS07295 (STMM20_07315) - 1429174..1429539 (-) 366 WP_164135764.1 MobC family plasmid mobilization relaxosome protein -
  STMM20_RS07300 (STMM20_07320) - 1429549..1429908 (-) 360 WP_000529539.1 SAG1252 family conjugative relaxosome accessory protein -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64876.77 Da        Isoelectric Point: 5.5902

>NTDB_id=448243 STMM20_RS07280 WP_347103512.1 1423324..1425060(-) (rcrP) [Streptococcus thermophilus strain MM20]
MAYIWSYLRRYPKWLAMNFTAAILFVIANLGLPTVLARMIDEGINRGDADKLYTYAWVMFGVVLTGIVGRVLLVYAVGKL
TTTMVQVMRNDIYAKLQEYSHHEYEQIGVSSLVTRITSDAFVLMQFADQVLKLGVITPLMMVSSVFLILTTSPSLAWIVA
ISLPFLAVVVWYVAVKTRPLSEKQQATLDKINQYARENLTGLRVIRAFAREDFQEKKFASENAVYADNSSKLFKLTGLTE
PLFVQIIIAMIVAIVWFALEPLGSGTLAIGDLVAFIEYSFHALLSFLFLANLFTMYPRTAVSSERLQEIMDMPISINPNE
DGVTETETRGYLEFDNVTFAYPGETESPVLHNISFKARPGETIAFIGSTGSGKSSLVQLIPRFYDVTLGRILVDGVDVRD
YNLKALRRKIGFIPQKALLFTGTIGENIRYGKENASHEELNQATDVAQAKEFIESKEERYDSHLAEGGSNLSGGQKQRLS
IARAVVKRPDLYIFDDSFSALDYKTDATLRRRLKEVTQDATVLIVAQRVGTIMDADQIIVLDKGEIVGRGRHEELMESNE
IYREIANSQFNQKSLTED

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=448243 STMM20_RS07280 WP_347103512.1 1423324..1425060(-) (rcrP) [Streptococcus thermophilus strain MM20]
ATGGCTTATATTTGGTCTTATCTCAGGCGTTACCCTAAGTGGCTAGCGATGAATTTTACGGCAGCTATTTTATTTGTTAT
TGCTAACCTGGGTCTGCCGACGGTTCTCGCCAGAATGATTGATGAGGGAATTAACCGTGGGGATGCTGACAAGCTTTATA
CCTATGCTTGGGTCATGTTTGGTGTGGTCTTAACTGGTATTGTTGGTCGTGTGCTTTTGGTCTATGCGGTTGGTAAGTTG
ACGACTACTATGGTGCAGGTCATGCGTAATGATATCTACGCCAAACTTCAGGAGTATTCACACCATGAGTACGAACAAAT
TGGGGTATCTTCTTTGGTGACTCGTATCACGTCGGATGCTTTTGTTCTCATGCAGTTTGCAGATCAAGTCCTCAAGTTGG
GTGTTATCACTCCTTTGATGATGGTTTCCAGTGTCTTTTTGATTTTGACGACAAGTCCATCTTTGGCTTGGATTGTGGCA
ATCTCCTTGCCTTTCCTAGCCGTAGTTGTCTGGTATGTGGCGGTAAAAACGCGTCCGCTTTCTGAAAAACAACAGGCAAC
TCTCGACAAGATTAACCAGTATGCTCGTGAAAATCTGACTGGACTTCGTGTCATCCGAGCTTTCGCTAGAGAAGATTTTC
AAGAGAAGAAGTTCGCTTCTGAAAATGCTGTCTATGCGGATAATTCAAGCAAACTTTTCAAATTGACTGGTTTGACCGAG
CCACTTTTTGTACAAATCATTATCGCTATGATTGTGGCTATTGTTTGGTTTGCTCTTGAGCCATTAGGTTCTGGGACTTT
AGCAATCGGTGACTTGGTTGCCTTTATTGAGTACAGCTTCCATGCACTATTGTCCTTCCTTTTCCTAGCCAATCTCTTTA
CCATGTATCCTCGTACGGCGGTGTCTAGTGAACGTCTGCAGGAAATTATGGACATGCCGATTTCTATCAATCCAAATGAA
GATGGCGTGACAGAAACCGAGACTAGGGGATATTTGGAATTTGACAATGTGACCTTTGCCTATCCCGGTGAAACTGAAAG
TCCTGTCCTACACAACATTTCTTTCAAGGCTAGACCAGGTGAAACCATTGCCTTTATCGGATCTACGGGTTCAGGAAAAT
CATCACTTGTACAGTTGATTCCACGCTTTTATGATGTAACACTTGGACGCATTCTTGTTGATGGTGTAGATGTCCGTGAC
TACAATCTTAAGGCTCTTCGTCGTAAGATTGGCTTTATCCCACAAAAAGCCCTACTCTTTACAGGGACTATCGGTGAAAA
TATCCGTTATGGTAAGGAAAATGCCAGTCATGAAGAATTGAATCAAGCCACTGATGTGGCTCAAGCCAAGGAATTTATCG
AAAGTAAGGAAGAACGCTATGATTCTCACTTGGCTGAGGGTGGTAGCAACCTTTCTGGTGGACAGAAGCAGCGTTTGTCA
ATTGCACGTGCTGTGGTTAAACGTCCTGACCTTTACATCTTTGATGATTCCTTCTCTGCCTTGGACTACAAGACTGATGC
GACCTTGCGCCGTCGTCTAAAAGAAGTGACCCAGGATGCGACAGTCTTGATTGTGGCTCAACGTGTGGGAACCATTATGG
ATGCAGATCAGATTATCGTTCTTGATAAGGGTGAAATTGTTGGTCGTGGCCGTCACGAAGAGCTCATGGAAAGTAATGAG
ATTTACCGTGAGATTGCTAATTCACAATTTAATCAAAAGAGTCTTACGGAAGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(17-279)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.286

92.042

0.362