Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   CUP3940_RS05140 Genome accession   NZ_CP053849
Coordinates   984011..984523 (-) Length   170 a.a.
NCBI ID   WP_004277468.1    Uniprot ID   A0A828QVD3
Organism   Campylobacter upsaliensis RM3940     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 979011..989523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CUP3940_RS05115 (CUP3940_0997) - 980721..981317 (+) 597 WP_176318458.1 MBL fold metallo-hydrolase -
  CUP3940_RS05120 (CUP3940_0998) - 981317..981610 (+) 294 WP_004277463.1 hypothetical protein -
  CUP3940_RS05125 - 981597..982220 (-) 624 WP_115633371.1 DUF2920 family protein -
  CUP3940_RS05130 - 982217..982786 (-) 570 WP_176318459.1 DUF2920 family protein -
  CUP3940_RS05135 (CUP3940_1000) - 982776..984014 (-) 1239 WP_176318460.1 DUF2920 family protein -
  CUP3940_RS05140 (CUP3940_1001) ctsG 984011..984523 (-) 513 WP_004277468.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  CUP3940_RS05145 (CUP3940_1002) tsaD 984532..985539 (-) 1008 WP_004277469.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  CUP3940_RS05150 (CUP3940_1003) - 985536..986924 (-) 1389 WP_176318461.1 M99 family carboxypeptidase catalytic domain-containing protein -
  CUP3940_RS05155 (CUP3940_1004) dxr 986899..987984 (-) 1086 WP_176318462.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  CUP3940_RS05160 (CUP3940_1005) - 987981..988709 (-) 729 WP_034958742.1 phosphatidate cytidylyltransferase -
  CUP3940_RS05165 (CUP3940_1006) - 988719..989084 (-) 366 WP_176318463.1 hypothetical protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18319.22 Da        Isoelectric Point: 7.7821

>NTDB_id=448149 CUP3940_RS05140 WP_004277468.1 984011..984523(-) (ctsG) [Campylobacter upsaliensis RM3940]
MKKAFTILELVFVIIILGILAAIALPKLSSSKDEAEISKALNNLRTFINDVSIYALKNDKLANTKLLSNVSGVEEVDLSR
NLGDVAFKVGEDERCVEFVFVQGASFVLMGLSTNDNVKNAIKAVANGTDESLLGNADFTSKSLNKACVALSKSENFKALA
NKTYLLLGTR

Nucleotide


Download         Length: 513 bp        

>NTDB_id=448149 CUP3940_RS05140 WP_004277468.1 984011..984523(-) (ctsG) [Campylobacter upsaliensis RM3940]
GTGAAAAAGGCTTTTACGATTTTAGAACTTGTTTTTGTGATTATAATACTTGGAATTTTAGCAGCTATTGCCCTACCAAA
ACTTAGCTCTAGCAAAGATGAAGCGGAAATTAGCAAGGCTTTAAATAATCTTAGAACTTTTATCAATGATGTAAGTATTT
ATGCTCTTAAAAATGACAAACTTGCAAATACTAAACTTCTTAGCAATGTTAGTGGCGTGGAGGAGGTGGATTTGTCTAGA
AATTTGGGCGATGTGGCGTTTAAGGTGGGTGAGGATGAAAGGTGCGTGGAATTTGTCTTCGTGCAAGGAGCTAGTTTTGT
TTTAATGGGGCTTTCGACTAATGATAATGTCAAAAATGCCATTAAAGCGGTAGCAAATGGAACCGATGAGAGCCTTTTGG
GTAATGCTGATTTTACAAGCAAATCTTTAAATAAAGCCTGTGTAGCATTGAGTAAGAGTGAAAATTTCAAGGCTTTGGCA
AATAAAACTTATTTGTTACTAGGCACGAGATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A828QVD3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

63.529

100

0.635