Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   CUP3940_RS02185 Genome accession   NZ_CP053849
Coordinates   421883..422617 (+) Length   244 a.a.
NCBI ID   WP_115635566.1    Uniprot ID   -
Organism   Campylobacter upsaliensis RM3940     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 416883..427617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CUP3940_RS02165 (CUP3940_0420) - 417527..418252 (+) 726 WP_176318257.1 GNAT family N-acetyltransferase -
  CUP3940_RS02170 (CUP3940_0421) lon 418309..420684 (-) 2376 WP_176318709.1 endopeptidase La -
  CUP3940_RS02175 (CUP3940_0422) - 420707..421354 (-) 648 WP_004276901.1 outer membrane protein assembly factor BamD -
  CUP3940_RS02180 (CUP3940_0423) fliW 421494..421883 (+) 390 WP_004276902.1 flagellar assembly protein FliW -
  CUP3940_RS02185 (CUP3940_0424) proC 421883..422617 (+) 735 WP_115635566.1 pyrroline-5-carboxylate reductase Machinery gene
  CUP3940_RS02190 (CUP3940_0425) - 422614..422928 (+) 315 WP_176318258.1 type II secretion system protein -
  CUP3940_RS02195 (CUP3940_0426) - 422930..423586 (+) 657 WP_167541493.1 hypothetical protein -
  CUP3940_RS02200 (CUP3940_0427) - 423583..424035 (+) 453 WP_115635569.1 hypothetical protein -
  CUP3940_RS02205 (CUP3940_0428) rpsR 424044..424304 (-) 261 WP_004274960.1 30S ribosomal protein S18 -
  CUP3940_RS02210 (CUP3940_0429) - 424317..424814 (-) 498 WP_004276907.1 single-stranded DNA-binding protein -
  CUP3940_RS02215 (CUP3940_0430) rpsF 424823..425200 (-) 378 WP_004276908.1 30S ribosomal protein S6 -
  CUP3940_RS02220 (CUP3940_0431) rseP 425298..426404 (-) 1107 WP_004276909.1 RIP metalloprotease RseP -
  CUP3940_RS02225 (CUP3940_0432) pgsA 426401..426931 (-) 531 WP_004276910.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26909.42 Da        Isoelectric Point: 7.7240

>NTDB_id=448144 CUP3940_RS02185 WP_115635566.1 421883..422617(+) (proC) [Campylobacter upsaliensis RM3940]
MSSIYILANGAMASALAYGLRDFYEIYIVGREAQKLEYLKKEGFKTLLYNEFDLENKNVILAFKPYALNEMSQILKGEAR
ILISVLANTSLKELECIRAQNIARIMPNIAAKYKASTTPFILKNELFKEEIVQILTSFGNAYELSSEKQMPSAMALSGCA
PAFLSLVAEALANGGVYRGLDKELSLKLTQGLFESFSTLLAHEHPALIKESVCSPAGVSIKGVKVLEERAIRAAFMEAVY
ISSK

Nucleotide


Download         Length: 735 bp        

>NTDB_id=448144 CUP3940_RS02185 WP_115635566.1 421883..422617(+) (proC) [Campylobacter upsaliensis RM3940]
ATGTCCAGCATTTATATCCTTGCAAATGGTGCTATGGCGAGTGCCTTAGCTTATGGTTTAAGAGATTTTTATGAAATTTA
TATAGTGGGGCGTGAAGCTCAAAAACTTGAATATTTGAAAAAAGAAGGCTTTAAAACTTTACTTTACAACGAATTTGACT
TGGAAAATAAAAATGTTATCTTGGCTTTTAAGCCTTATGCTTTAAATGAAATGTCCCAAATTCTAAAGGGGGAAGCGAGG
ATTTTAATTTCCGTTTTGGCAAATACTAGTTTGAAAGAATTAGAGTGTATTAGAGCTCAAAATATTGCGAGGATTATGCC
AAATATCGCTGCTAAATATAAAGCCTCTACCACACCTTTTATATTAAAAAACGAGCTTTTTAAAGAAGAAATAGTCCAAA
TTTTAACAAGTTTTGGTAATGCTTATGAATTGAGTAGCGAAAAACAAATGCCAAGCGCTATGGCTTTAAGTGGCTGTGCG
CCCGCTTTTCTTTCTTTGGTGGCTGAAGCTCTTGCAAATGGTGGTGTGTATAGAGGTTTAGATAAGGAGTTAAGTTTAAA
GCTTACGCAAGGGCTTTTTGAAAGCTTTTCGACACTTTTAGCTCACGAGCACCCAGCTCTTATCAAAGAAAGTGTTTGCT
CACCTGCTGGTGTGAGCATAAAAGGCGTGAAGGTGTTGGAAGAAAGGGCTATTAGAGCGGCATTTATGGAGGCTGTTTAT
ATCAGCTCCAAATGA

Domains

Predicted by InterproScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(147-239)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

65.833

98.361

0.648