Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   CORN_RS05190 Genome accession   NZ_CP053848
Coordinates   1001687..1002415 (-) Length   242 a.a.
NCBI ID   WP_066008711.1    Uniprot ID   A0A6M8MJK2
Organism   Campylobacter ornithocola strain LMG 29815     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 996687..1007415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CORN_RS05150 (CORN_1014) holA 997356..998321 (+) 966 WP_066008718.1 DNA polymerase III subunit delta -
  CORN_RS05155 (CORN_1015) rpsF 998415..998789 (+) 375 WP_066008717.1 30S ribosomal protein S6 -
  CORN_RS05160 (CORN_1016) - 998792..999319 (+) 528 WP_066008716.1 single-stranded DNA-binding protein -
  CORN_RS05165 (CORN_1017) rpsR 999331..999591 (+) 261 WP_039618521.1 30S ribosomal protein S18 -
  CORN_RS05170 (CORN_1018) - 999640..1000281 (+) 642 WP_066008715.1 MarC family protein -
  CORN_RS05175 (CORN_1019) - 1000263..1000685 (-) 423 WP_066008714.1 hypothetical protein -
  CORN_RS05180 (CORN_1020) - 1000682..1001410 (-) 729 WP_066008713.1 hypothetical protein -
  CORN_RS05185 (CORN_1021) - 1001394..1001690 (-) 297 WP_066008712.1 hypothetical protein -
  CORN_RS05190 (CORN_1022) proC 1001687..1002415 (-) 729 WP_066008711.1 pyrroline-5-carboxylate reductase Machinery gene
  CORN_RS05195 (CORN_1023) fliW 1002415..1002810 (-) 396 WP_066008710.1 flagellar assembly protein FliW -
  CORN_RS05200 (CORN_1024) bamD 1002984..1003640 (+) 657 WP_066008709.1 outer membrane protein assembly factor BamD -
  CORN_RS05205 (CORN_1025) lon 1003640..1006018 (+) 2379 WP_066008708.1 endopeptidase La -
  CORN_RS08555 (CORN_1026) - 1006040..1007410 (-) 1371 WP_066008707.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 26545.72 Da        Isoelectric Point: 7.2911

>NTDB_id=448130 CORN_RS05190 WP_066008711.1 1001687..1002415(-) (proC) [Campylobacter ornithocola strain LMG 29815]
MSEIYILGNGAMASAIAKGLKDNYKVVIVARDLKKASSLNLEILSYEEFDIEDKNVILAFKPYALNEVASKLKGKARWLI
SVLANTTFEQLHCINAQNHIKIMPNTAAEFKASTTAYLMENDLFKDEVLSLLNTFGKAISLQNEKEFDVAMVLSGCAPAF
LALVAESLANAGVKNGLKNELSYELTRASFESFSALFNHTHPAIIKEKICSPAGVTIKGIEALEKRALRGTFFEAFNASL
NK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=448130 CORN_RS05190 WP_066008711.1 1001687..1002415(-) (proC) [Campylobacter ornithocola strain LMG 29815]
ATGTCTGAAATTTATATTTTAGGAAATGGTGCTATGGCTAGTGCTATAGCTAAAGGTTTAAAAGATAATTATAAAGTAGT
TATTGTTGCTAGGGATTTAAAAAAAGCTAGTAGCTTAAATCTAGAAATTTTGTCTTATGAAGAATTTGATATAGAAGACA
AAAATGTTATTTTAGCATTTAAACCTTATGCTTTAAATGAAGTGGCTAGCAAATTAAAAGGCAAGGCAAGATGGCTTATT
TCAGTTTTAGCAAATACCACTTTTGAGCAACTTCATTGTATTAATGCACAAAATCATATAAAAATTATGCCAAATACAGC
AGCTGAATTTAAGGCTTCAACAACTGCGTATTTAATGGAAAATGATTTATTTAAAGATGAAGTTTTATCTTTGCTGAATA
CTTTTGGAAAAGCCATAAGTTTGCAAAATGAAAAAGAATTTGACGTGGCTATGGTATTAAGTGGTTGTGCCCCCGCATTT
TTAGCTTTAGTAGCAGAAAGTCTAGCTAATGCAGGTGTAAAAAATGGTTTGAAAAATGAGCTTAGTTATGAGCTTACTCG
TGCAAGTTTTGAAAGTTTTAGTGCTTTGTTTAACCATACACACCCAGCTATTATAAAAGAAAAAATTTGTTCTCCAGCGG
GAGTAACTATAAAAGGGATCGAAGCTTTGGAAAAACGAGCTTTACGTGGTACTTTTTTTGAAGCTTTTAATGCAAGTTTA
AATAAATGA

Domains

Predicted by InterproScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-84)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(144-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M8MJK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

59.833

98.76

0.591