Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   CGEO_RS03430 Genome accession   NZ_CP053844
Coordinates   737854..738585 (+) Length   243 a.a.
NCBI ID   WP_075540094.1    Uniprot ID   A0A128EDY4
Organism   Campylobacter geochelonis strain LMG 29375     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 732854..743585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGEO_RS03405 (CGEO_0678) - 733220..733447 (+) 228 WP_075493402.1 YdcH family protein -
  CGEO_RS03410 (CGEO_0679) - 733453..733896 (-) 444 WP_075493401.1 hypothetical protein -
  CGEO_RS03415 (CGEO_0680) - 734069..734632 (+) 564 WP_075493400.1 PAS domain-containing protein -
  CGEO_RS03420 (CGEO_0681) lon 734668..737070 (-) 2403 WP_075540093.1 endopeptidase La -
  CGEO_RS03425 (CGEO_0682) - 737103..737747 (-) 645 WP_075493398.1 outer membrane protein assembly factor BamD -
  CGEO_RS03430 (CGEO_0683) proC 737854..738585 (+) 732 WP_075540094.1 pyrroline-5-carboxylate reductase Machinery gene
  CGEO_RS03435 (CGEO_0684) - 738674..739435 (+) 762 WP_075540095.1 type II secretion system protein -
  CGEO_RS03440 (CGEO_0685) - 739435..740346 (+) 912 WP_075540096.1 type II secretion system protein -
  CGEO_RS03445 (CGEO_0686) - 740346..740816 (+) 471 WP_075540097.1 hypothetical protein -
  CGEO_RS03450 (CGEO_0687) raiA 740868..741407 (+) 540 WP_075540098.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26050.36 Da        Isoelectric Point: 7.9255

>NTDB_id=448101 CGEO_RS03430 WP_075540094.1 737854..738585(+) (proC) [Campylobacter geochelonis strain LMG 29375]
MKIYILGNGAMATAMALGLRDLYEVVVVGRDKEKLAKFAKFDIKTEVYGQIYDINDKNIILAFKPYALKTMSEKLSGRAN
NCISVLAMTKLDELNCIDAKNRICAIPNIAAEFKASITPYFTQDDDSVAKEVLDGFGKSVAVYSDDELKSAGVIAGCAPA
YLAIVAEALANGGVKEGLKKEISLNLVSGVFASFSKLLEHSHPALLKERVCSPKGTTIEGVAVLEECGVRSAFIKALSAS
AKK

Nucleotide


Download         Length: 732 bp        

>NTDB_id=448101 CGEO_RS03430 WP_075540094.1 737854..738585(+) (proC) [Campylobacter geochelonis strain LMG 29375]
ATGAAAATTTATATCTTAGGAAATGGCGCGATGGCAACTGCTATGGCACTTGGACTGCGAGATTTATATGAAGTTGTAGT
TGTAGGAAGAGATAAAGAGAAGTTAGCTAAGTTTGCTAAATTTGATATAAAAACTGAAGTTTATGGTCAAATTTATGATA
TAAATGATAAAAATATCATCTTAGCTTTTAAGCCGTACGCTCTTAAAACTATGAGCGAAAAGCTTAGCGGAAGGGCAAAT
AACTGCATAAGCGTTTTAGCGATGACAAAGCTAGATGAGTTAAACTGCATTGATGCTAAAAACAGAATTTGCGCTATACC
AAACATAGCAGCCGAGTTTAAAGCTTCGATAACGCCGTATTTTACACAAGATGATGATAGCGTGGCTAAAGAGGTTTTAG
ATGGATTTGGAAAAAGTGTGGCTGTTTATAGCGATGATGAGCTAAAGAGCGCTGGAGTTATCGCAGGTTGCGCTCCTGCA
TATCTTGCAATCGTAGCCGAAGCGTTGGCAAATGGTGGAGTAAAAGAGGGGCTTAAAAAAGAGATTTCGCTAAATTTAGT
TTCTGGAGTTTTTGCAAGTTTTTCAAAACTTTTAGAGCATTCTCATCCAGCTTTGCTTAAAGAAAGAGTATGTTCTCCAA
AAGGCACAACTATCGAGGGTGTGGCGGTTTTGGAAGAGTGTGGGGTTAGAAGTGCATTTATAAAAGCGTTAAGCGCTAGT
GCAAAAAAGTAA

Domains

Predicted by InterproScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(2-81)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(147-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A128EDY4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

48.361

100

0.486