Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CCORG_RS05295 Genome accession   NZ_CP053842
Coordinates   1022718..1023107 (-) Length   129 a.a.
NCBI ID   WP_025803291.1    Uniprot ID   -
Organism   Campylobacter corcagiensis strain LMG 27932     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1017718..1028107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCORG_RS05275 (CCORG_1049) - 1017741..1018256 (-) 516 WP_025803295.1 nitrate reductase cytochrome c-type subunit -
  CCORG_RS05280 (CCORG_1050) napH 1018253..1019038 (-) 786 WP_025803294.1 quinol dehydrogenase ferredoxin subunit NapH -
  CCORG_RS05285 (CCORG_1051) napG 1019038..1019793 (-) 756 WP_025803293.1 ferredoxin-type protein NapG -
  CCORG_RS05290 (CCORG_1052) napA 1019799..1022582 (-) 2784 WP_025803292.1 nitrate reductase catalytic subunit NapA -
  CCORG_RS05295 (CCORG_1053) dprB 1022718..1023107 (-) 390 WP_025803291.1 Holliday junction resolvase RuvX Machinery gene
  CCORG_RS05300 (CCORG_1054) - 1023104..1023880 (-) 777 WP_025803290.1 DNA-processing protein DprA -
  CCORG_RS05305 (CCORG_1055) - 1023864..1024931 (-) 1068 WP_025803289.1 divergent polysaccharide deacetylase family protein -
  CCORG_RS05310 (CCORG_1056) ilvC 1024934..1025956 (-) 1023 WP_025803288.1 ketol-acid reductoisomerase -
  CCORG_RS05315 (CCORG_1057) - 1026034..1027974 (+) 1941 WP_025803287.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14044.32 Da        Isoelectric Point: 10.4275

>NTDB_id=448089 CCORG_RS05295 WP_025803291.1 1022718..1023107(-) (dprB) [Campylobacter corcagiensis strain LMG 27932]
MIAGLDIGLKRIGIALGYPNGVVVPINAVLRKNRKQASNDVSKVLKEWGVKTIVVGVPLGGSSEDEMRRRVKHFVGLLDF
SGEVFYQDESFSSIEASSLGVVNQRKKDGKLDSLSAKIIVERFLSGITK

Nucleotide


Download         Length: 390 bp        

>NTDB_id=448089 CCORG_RS05295 WP_025803291.1 1022718..1023107(-) (dprB) [Campylobacter corcagiensis strain LMG 27932]
GTGATAGCTGGACTTGATATTGGGCTTAAAAGAATAGGAATTGCCTTAGGATACCCAAATGGCGTTGTAGTGCCTATAAA
TGCAGTACTACGAAAAAACCGCAAACAAGCATCTAATGATGTAAGCAAGGTTTTAAAAGAGTGGGGAGTTAAAACTATAG
TAGTTGGCGTTCCACTTGGTGGAAGTAGCGAAGATGAGATGAGAAGAAGAGTCAAACATTTTGTTGGGCTACTTGATTTT
AGTGGGGAAGTTTTTTATCAAGATGAGAGCTTTTCAAGTATAGAAGCAAGTAGTCTTGGCGTTGTAAATCAAAGAAAAAA
AGATGGCAAACTAGATAGCTTATCAGCTAAGATAATAGTTGAGAGATTTTTATCTGGAATAACAAAATAA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

46.667

100

0.488