Detailed information
Bioinformatically predicted
Overview
| Name | rarA | Type | Machinery gene |
| Locus tag | STCNRZ1151_RS09115 | Genome accession | NZ_CP065483 |
| Coordinates | 1733057..1734325 (-) | Length | 422 a.a. |
| NCBI ID | WP_002952183.1 | Uniprot ID | Q5M295 |
| Organism | Streptococcus thermophilus strain CNRZ1151 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1728057..1739325
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| STCNRZ1151_RS09085 (STCNRZ1151_09065) | - | 1728361..1729902 (+) | 1542 | WP_002948651.1 | ABC transporter ATP-binding protein | - |
| STCNRZ1151_RS09565 | - | 1730035..1730250 (+) | 216 | WP_041827116.1 | hypothetical protein | - |
| STCNRZ1151_RS09090 (STCNRZ1151_09070) | - | 1730296..1731273 (+) | 978 | WP_011226670.1 | replication initiation protein | - |
| STCNRZ1151_RS09095 (STCNRZ1151_09075) | - | 1731285..1731473 (+) | 189 | WP_000369785.1 | DUF3173 domain-containing protein | - |
| STCNRZ1151_RS09100 (STCNRZ1151_09080) | - | 1731475..1732614 (+) | 1140 | WP_011226671.1 | site-specific integrase | - |
| STCNRZ1151_RS09115 (STCNRZ1151_09095) | rarA | 1733057..1734325 (-) | 1269 | WP_002952183.1 | replication-associated recombination protein A | Machinery gene |
| STCNRZ1151_RS09120 (STCNRZ1151_09100) | rpmB | 1734496..1734684 (+) | 189 | WP_002952184.1 | 50S ribosomal protein L28 | - |
| STCNRZ1151_RS09125 (STCNRZ1151_09105) | - | 1734811..1735077 (+) | 267 | WP_002952186.1 | IreB family regulatory phosphoprotein | - |
| STCNRZ1151_RS09130 (STCNRZ1151_09110) | ruvX | 1735077..1735496 (+) | 420 | WP_002952187.1 | Holliday junction resolvase RuvX | - |
| STCNRZ1151_RS09135 (STCNRZ1151_09115) | - | 1735605..1735910 (+) | 306 | WP_011681733.1 | DUF1292 domain-containing protein | - |
| STCNRZ1151_RS09140 (STCNRZ1151_09120) | - | 1736123..1737769 (+) | 1647 | WP_011226673.1 | membrane protein | - |
Sequence
Protein
Download Length: 422 a.a. Molecular weight: 46419.92 Da Isoelectric Point: 6.8977
>NTDB_id=448059 STCNRZ1151_RS09115 WP_002952183.1 1733057..1734325(-) (rarA) [Streptococcus thermophilus strain CNRZ1151]
MPDNLALRMRPRSISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
NVLGDKERGFAFEVHLDDDALDFIATATNGDLRSAYNSLDLAVMSTPASGNGQHHITLDIVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYKAMDAALADLRKSGNLPIPRHLRDGHYAGSKALGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR
MPDNLALRMRPRSISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
NVLGDKERGFAFEVHLDDDALDFIATATNGDLRSAYNSLDLAVMSTPASGNGQHHITLDIVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYKAMDAALADLRKSGNLPIPRHLRDGHYAGSKALGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR
Nucleotide
Download Length: 1269 bp
>NTDB_id=448059 STCNRZ1151_RS09115 WP_002952183.1 1733057..1734325(-) (rarA) [Streptococcus thermophilus strain CNRZ1151]
ATGCCAGATAATCTTGCTTTACGCATGCGTCCACGTTCAATTTCAGAGGTGATTGGTCAGAAGCATTTAGTTGGTGAAGG
TAAAATTATTCGCCGTATGGTAGAGGCGAATATGCTGTCGTCAATGATTCTCTACGGACCTCCAGGAATCGGGAAAACCT
CGATAGCCAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACTTTTAATGCCACTGTCGACAGCAAAAAACGTCTA
CAGGAAATTGCAGAAGAGGCTAAATTTTCAGGTGGTTTAGTTCTACTTCTAGATGAGATCCATCGTTTGGATAAAGCGAA
ACAAGATTTTTTGTTACCATTATTAGAGAACGGAAATATTATCATGATTGGTGCCACAACCGAGAATCCGTTTTTTTCTG
TAACACCAGCCATCCGTAGCCGTGTACAAATATTTGAGTTAGAACCACTCTCTAATGAAGATATCAAGGAAGCTATTTTG
AATGTTCTAGGGGACAAGGAGCGTGGCTTCGCCTTTGAGGTTCACTTAGATGATGATGCTCTAGATTTTATTGCGACAGC
TACTAATGGTGATTTACGATCGGCATATAATTCTTTGGATCTGGCTGTCATGTCGACACCAGCTTCAGGAAATGGTCAGC
ATCATATTACCTTAGACATAGTGGAAAATAGCTTACAACGCAGTTATATTACTATGGATAAAGATGGTGATGGGCACTAT
GATGTCCTTTCTGCCTTGCAAAAATCTATTCGAGGATCTGATGTTAATGCCAGTCTTCACTATGCGGCACGTTTGGTTGA
GGCAGGGGATTTGCCTAGTCTAGCACGTCGCTTGACTGTGATTGCCTATGAGGATATTGGTTTAGCTAATCCAGATGCAC
AAGTTCACACGGTCACAGCCTTGGAAGCTGCACAGAAAATAGGTTTTCCGGAGGCACGTATTTTGATTGCCAACGTAGTT
ATTGACTTAGCATTATCACCTAAGTCGAATTCGGCTTATAAGGCAATGGATGCTGCCCTGGCGGATCTTAGAAAGTCTGG
GAATTTACCTATTCCACGTCATCTGAGAGATGGACACTATGCTGGAAGTAAGGCACTGGGTAATGCACAAGATTATAAGT
ATCCACATGCCTATCCTGAAAAGTGGGTTAAGCAACAATACCTTCCAGATAAATTAAGAGGAGTCAATTATTTCCAACCT
AATGAAACTGGGAAATACGAAAGAGCTCTTGGAGCTAATAAAGAACGAATCGATAAGTTATCTAGATAA
ATGCCAGATAATCTTGCTTTACGCATGCGTCCACGTTCAATTTCAGAGGTGATTGGTCAGAAGCATTTAGTTGGTGAAGG
TAAAATTATTCGCCGTATGGTAGAGGCGAATATGCTGTCGTCAATGATTCTCTACGGACCTCCAGGAATCGGGAAAACCT
CGATAGCCAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACTTTTAATGCCACTGTCGACAGCAAAAAACGTCTA
CAGGAAATTGCAGAAGAGGCTAAATTTTCAGGTGGTTTAGTTCTACTTCTAGATGAGATCCATCGTTTGGATAAAGCGAA
ACAAGATTTTTTGTTACCATTATTAGAGAACGGAAATATTATCATGATTGGTGCCACAACCGAGAATCCGTTTTTTTCTG
TAACACCAGCCATCCGTAGCCGTGTACAAATATTTGAGTTAGAACCACTCTCTAATGAAGATATCAAGGAAGCTATTTTG
AATGTTCTAGGGGACAAGGAGCGTGGCTTCGCCTTTGAGGTTCACTTAGATGATGATGCTCTAGATTTTATTGCGACAGC
TACTAATGGTGATTTACGATCGGCATATAATTCTTTGGATCTGGCTGTCATGTCGACACCAGCTTCAGGAAATGGTCAGC
ATCATATTACCTTAGACATAGTGGAAAATAGCTTACAACGCAGTTATATTACTATGGATAAAGATGGTGATGGGCACTAT
GATGTCCTTTCTGCCTTGCAAAAATCTATTCGAGGATCTGATGTTAATGCCAGTCTTCACTATGCGGCACGTTTGGTTGA
GGCAGGGGATTTGCCTAGTCTAGCACGTCGCTTGACTGTGATTGCCTATGAGGATATTGGTTTAGCTAATCCAGATGCAC
AAGTTCACACGGTCACAGCCTTGGAAGCTGCACAGAAAATAGGTTTTCCGGAGGCACGTATTTTGATTGCCAACGTAGTT
ATTGACTTAGCATTATCACCTAAGTCGAATTCGGCTTATAAGGCAATGGATGCTGCCCTGGCGGATCTTAGAAAGTCTGG
GAATTTACCTATTCCACGTCATCTGAGAGATGGACACTATGCTGGAAGTAAGGCACTGGGTAATGCACAAGATTATAAGT
ATCCACATGCCTATCCTGAAAAGTGGGTTAAGCAACAATACCTTCCAGATAAATTAAGAGGAGTCAATTATTTCCAACCT
AATGAAACTGGGAAATACGAAAGAGCTCTTGGAGCTAATAAAGAACGAATCGATAAGTTATCTAGATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rarA | Bacillus subtilis subsp. subtilis str. 168 |
59.666 |
99.289 |
0.592 |