Detailed information NTG0447998

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: CMCT_RS04860
• Genome accession: NZ_CP053831
• Coordinates: 924359..925699 (+)
• Length: 446 a.a.
• NCBI ID: WP_034966928.1
• Uniprot ID: -
• Organism: Campylobacter mucosalis strain ATCC 43264
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 919359..930699

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CMCT_RS04825 (CMCT_0954)	-	919475..920062 (-)	588	WP_034966942.1	lipid-binding SYLF domain-containing protein	-
CMCT_RS04830 (CMCT_0955)	rny	920072..921625 (-)	1554	WP_034966940.1	ribonuclease Y	-
CMCT_RS04835 (CMCT_0956)	-	921546..922187 (-)	642	WP_034967628.1	5-formyltetrahydrofolate cyclo-ligase	-
CMCT_RS04840 (CMCT_0957)	-	922237..922818 (+)	582	WP_034966937.1	TlpA disulfide reductase family protein	-
CMCT_RS04845 (CMCT_0958)	ftsY	922815..923657 (+)	843	WP_034966935.1	signal recognition particle-docking protein FtsY	-
CMCT_RS04850 (CMCT_0959)	-	923650..924033 (+)	384	WP_236844909.1	VanZ family protein	-
CMCT_RS04855 (CMCT_0960)	-	924079..924306 (-)	228	WP_034966929.1	hypothetical protein	-
CMCT_RS04860 (CMCT_0961)	radA	924359..925699 (+)	1341	WP_034966928.1	DNA repair protein RadA	Machinery gene
CMCT_RS04865 (CMCT_0962)	cmoA	925704..926414 (-)	711	WP_034966925.1	carboxy-S-adenosyl-L-methionine synthase CmoA	-
CMCT_RS04870 (CMCT_0963)	-	926540..927391 (-)	852	WP_034966923.1	bifunctional riboflavin kinase/FAD synthetase	-
CMCT_RS04875 (CMCT_0964)	-	927357..928064 (-)	708	WP_034966921.1	TlyA family RNA methyltransferase	-
CMCT_RS04880 (CMCT_0965)	ligA	928061..930007 (-)	1947	WP_034966918.1	NAD-dependent DNA ligase LigA	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49019.60 Da
• Isoelectric Point: 7.5085

>NTDB_id=447998 CMCT_RS04860 WP_034966928.1 924359..925699(+) (radA) [Campylobacter mucosalis strain ATCC 43264]
MAKNKAVFECQSCGNQQGKWVGKCPNCGAWDSFIELSQTQIKVNEEIAKISNTPSKAVGIDKVEIESINRFSTSDKELDL
VLGGGVVEGSLVLIGGSPGIGKSTLLLKIGSNLAKDDKKTLYVSGEESASQIKMRAERLNAVDKNLYLLTEICLENIIAE
VRKSEYKVLIIDSIQTLYSEKVSSAPGSVSQVREITFELLRLAKDENICVFIVGHITKEGAIAGPRVLEHMVDVVLYFEG
DASRELRILRGFKNRFGSTSEVGIFEMGKNGLVSATEISSKFFTRGNAISGSAITIIMEGTRALSVEIQALVCESSYPKR
SATGYEKNRLDMLLALLERKLEIPLGHYDVFINVSGGVKITETAADLAVVAAIISSFKNRPISKESVFIGELSLNGEIRD
VFNIDQRLKEAKTQKFKNAIIPSKPLDTQRIKCFYAKEITQVIEWM

Nucleotide

• Length: 1341 bp

>NTDB_id=447998 CMCT_RS04860 WP_034966928.1 924359..925699(+) (radA) [Campylobacter mucosalis strain ATCC 43264]
ATGGCAAAAAATAAGGCAGTTTTTGAGTGTCAAAGCTGTGGCAATCAGCAAGGCAAATGGGTGGGAAAATGTCCAAATTG
CGGTGCTTGGGATAGCTTTATAGAACTTAGTCAAACACAGATAAAAGTAAATGAAGAGATAGCAAAAATTTCAAACACGC
CAAGCAAAGCAGTTGGTATTGATAAGGTTGAGATTGAGAGCATTAATAGATTTTCAACCAGCGATAAAGAGCTTGATTTG
GTGCTTGGAGGCGGTGTGGTTGAAGGCTCACTCGTGCTAATTGGAGGCAGTCCTGGCATTGGCAAATCAACGCTTCTTTT
AAAAATCGGCTCAAATTTAGCCAAGGATGATAAAAAAACACTTTATGTAAGTGGCGAGGAGAGTGCTAGTCAGATAAAAA
TGAGAGCCGAGCGACTAAATGCAGTGGATAAAAATTTATACCTTTTAACTGAAATTTGCCTTGAAAATATCATCGCCGAG
GTGCGAAAGAGCGAGTATAAGGTGCTTATAATTGACTCAATCCAAACGCTATATTCAGAAAAAGTAAGCTCGGCACCGGG
TTCAGTTTCGCAGGTTCGTGAGATTACATTTGAGCTTTTAAGACTTGCAAAAGATGAAAATATCTGCGTTTTTATCGTCG
GACACATTACAAAAGAGGGTGCGATAGCAGGACCTAGAGTGCTTGAACATATGGTTGATGTGGTGCTTTATTTTGAGGGC
GATGCGTCAAGAGAGTTGCGAATTTTACGTGGTTTTAAAAATCGCTTTGGTTCAACAAGTGAGGTTGGAATTTTTGAAAT
GGGTAAAAATGGCTTAGTTTCAGCCACTGAAATTTCAAGTAAATTTTTCACTCGTGGTAACGCCATAAGTGGCTCAGCAA
TCACGATAATAATGGAAGGCACACGTGCTTTAAGTGTTGAGATTCAAGCTCTTGTTTGCGAGAGTAGCTACCCAAAACGA
AGTGCGACTGGATATGAAAAAAACCGCCTTGATATGCTCTTAGCACTCCTAGAGCGAAAGCTTGAAATTCCACTGGGGCA
TTATGATGTTTTCATAAACGTTTCAGGTGGCGTTAAAATCACAGAAACGGCGGCTGATTTGGCGGTGGTTGCGGCTATTA
TTTCAAGTTTTAAAAATCGTCCAATTAGTAAAGAGAGTGTTTTTATCGGGGAGCTTAGCCTAAACGGCGAAATTCGCGAT
GTTTTTAATATAGACCAACGCCTAAAGGAGGCAAAAACACAGAAATTTAAAAATGCGATAATACCTAGCAAACCACTTGA
TACGCAGCGGATTAAGTGTTTTTATGCAAAAGAGATTACGCAGGTAATTGAATGGATGTGA

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• Subunit ChlI of Mg-chelatase (ChlI) (347-423)

• AAA domain (AAA_25) (67-220)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus mitis SK321	48.337	100	0.489
radA	Streptococcus pneumoniae Rx1	49.884	96.637	0.482
radA	Streptococcus pneumoniae D39	49.884	96.637	0.482
radA	Streptococcus pneumoniae R6	49.884	96.637	0.482
radA	Streptococcus pneumoniae TIGR4	49.884	96.637	0.482
radA	Streptococcus mitis NCTC 12261	49.652	96.637	0.48
radA	Bacillus subtilis subsp. subtilis str. 168	49.074	96.861	0.475