Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   CLLT_RS04820 Genome accession   NZ_CP053830
Coordinates   907948..908676 (-) Length   242 a.a.
NCBI ID   WP_041570288.1    Uniprot ID   A0A7U8A6E3
Organism   Campylobacter lari subsp. lari strain LMG 8846     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 902948..913676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLLT_RS04780 (CLLT_0953) holA 903616..904581 (+) 966 WP_012661657.1 DNA polymerase III subunit delta -
  CLLT_RS04785 (CLLT_0954) rpsF 904673..905047 (+) 375 WP_012661658.1 30S ribosomal protein S6 -
  CLLT_RS04790 (CLLT_0955) - 905051..905578 (+) 528 WP_012661659.1 single-stranded DNA-binding protein -
  CLLT_RS04795 (CLLT_0956) rpsR 905589..905849 (+) 261 WP_012661660.1 30S ribosomal protein S18 -
  CLLT_RS04800 (CLLT_0957) - 905901..906542 (+) 642 WP_012661661.1 MarC family protein -
  CLLT_RS04805 (CLLT_0958) - 906524..906946 (-) 423 WP_012661662.1 hypothetical protein -
  CLLT_RS04810 (CLLT_0959) - 906943..907671 (-) 729 WP_012661663.1 type II secretion system protein -
  CLLT_RS04815 (CLLT_0960) - 907655..907951 (-) 297 WP_012661664.1 hypothetical protein -
  CLLT_RS04820 (CLLT_0961) proC 907948..908676 (-) 729 WP_041570288.1 pyrroline-5-carboxylate reductase Machinery gene
  CLLT_RS04825 (CLLT_0962) fliW 908676..909071 (-) 396 WP_012661666.1 flagellar assembly protein FliW -
  CLLT_RS04830 (CLLT_0963) bamD 909248..909904 (+) 657 WP_012661667.1 outer membrane protein assembly factor BamD -
  CLLT_RS04835 (CLLT_0964) lon 909904..912282 (+) 2379 WP_074691842.1 endopeptidase La -
  CLLT_RS07995 (CLLT_0965) - 912294..913676 (-) 1383 WP_305954353.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 26473.71 Da        Isoelectric Point: 7.2137

>NTDB_id=447985 CLLT_RS04820 WP_041570288.1 907948..908676(-) (proC) [Campylobacter lari subsp. lari strain LMG 8846]
MSEIYILGNGAMASAIAKGIGDAYEVIIVARDLKKASSLNFKVISYNEFDMDNKNIILAFKPYALEEVAVKLKGKARWLI
SVLANTTFEQLHCIDAQNYIKIMPNTAAQFKASATAYLMENDLYKDEILSLLSTFGKAISLQNEKEFDIAMVLSGCAPAF
LALVAESLANAGVKNGLKNELSYELTRASFESFGALFNHIHPAIIKEKICSPAGVTIRGVEALEKRALRGAFFEAFNASL
NK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=447985 CLLT_RS04820 WP_041570288.1 907948..908676(-) (proC) [Campylobacter lari subsp. lari strain LMG 8846]
ATGTCTGAAATTTATATTTTAGGAAATGGTGCTATGGCTAGTGCTATAGCAAAAGGTATAGGTGATGCTTATGAGGTGAT
AATAGTTGCAAGAGATTTAAAAAAGGCAAGTAGTTTGAATTTCAAAGTCATATCATACAATGAGTTTGATATGGATAATA
AAAATATTATTTTGGCTTTTAAACCTTATGCGTTAGAAGAAGTAGCTGTTAAATTAAAAGGCAAGGCAAGATGGCTTATT
TCAGTTTTAGCAAATACTACTTTTGAGCAACTTCATTGTATTGATGCACAAAATTATATAAAAATTATGCCAAATACAGC
AGCCCAATTTAAAGCCTCAGCGACTGCGTATTTGATGGAAAATGATTTATATAAAGACGAAATTTTATCATTGCTAAGTA
CTTTTGGTAAAGCTATAAGTTTACAAAATGAAAAAGAATTTGATATAGCTATGGTTTTGAGTGGTTGTGCTCCTGCGTTT
TTGGCTTTGGTAGCAGAAAGTTTAGCTAATGCGGGTGTGAAAAATGGTTTAAAAAATGAGCTTAGCTATGAGCTTACTCG
CGCAAGTTTTGAAAGCTTTGGTGCTTTATTTAACCATATACATCCTGCTATTATTAAAGAAAAAATTTGTTCTCCGGCAG
GGGTGACTATAAGAGGGGTTGAGGCTTTAGAAAAAAGAGCTTTGCGTGGTGCTTTTTTTGAAGCTTTTAATGCAAGTTTA
AATAAATGA

Domains

Predicted by InterproScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(144-241)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U8A6E3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

57.741

98.76

0.57