Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   STCNRZ760_RS09460 Genome accession   NZ_CP065482
Coordinates   1809438..1810706 (-) Length   422 a.a.
NCBI ID   WP_002952183.1    Uniprot ID   Q5M295
Organism   Streptococcus thermophilus strain CNRZ760     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1804438..1815706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STCNRZ760_RS09425 (STCNRZ760_09365) - 1804759..1806300 (+) 1542 WP_002948651.1 ABC transporter ATP-binding protein -
  STCNRZ760_RS09430 - 1806433..1806648 (+) 216 WP_041827116.1 hypothetical protein -
  STCNRZ760_RS09435 (STCNRZ760_09370) - 1806678..1807655 (+) 978 WP_087010212.1 replication initiation protein -
  STCNRZ760_RS09440 (STCNRZ760_09375) - 1807667..1807855 (+) 189 WP_000369785.1 DUF3173 domain-containing protein -
  STCNRZ760_RS09445 (STCNRZ760_09380) - 1807857..1808996 (+) 1140 WP_180481135.1 site-specific integrase -
  STCNRZ760_RS09460 (STCNRZ760_09395) rarA 1809438..1810706 (-) 1269 WP_002952183.1 replication-associated recombination protein A Machinery gene
  STCNRZ760_RS09465 (STCNRZ760_09400) rpmB 1810877..1811065 (+) 189 WP_002952184.1 50S ribosomal protein L28 -
  STCNRZ760_RS09470 (STCNRZ760_09405) - 1811192..1811458 (+) 267 WP_002952186.1 IreB family regulatory phosphoprotein -
  STCNRZ760_RS09475 (STCNRZ760_09410) ruvX 1811458..1811877 (+) 420 WP_002952187.1 Holliday junction resolvase RuvX -
  STCNRZ760_RS09480 (STCNRZ760_09415) - 1811986..1812291 (+) 306 WP_002952188.1 DUF1292 domain-containing protein -
  STCNRZ760_RS09485 (STCNRZ760_09420) - 1812504..1814150 (+) 1647 WP_180481136.1 hypothetical protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46419.92 Da        Isoelectric Point: 6.8977

>NTDB_id=447963 STCNRZ760_RS09460 WP_002952183.1 1809438..1810706(-) (rarA) [Streptococcus thermophilus strain CNRZ760]
MPDNLALRMRPRSISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
NVLGDKERGFAFEVHLDDDALDFIATATNGDLRSAYNSLDLAVMSTPASGNGQHHITLDIVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYKAMDAALADLRKSGNLPIPRHLRDGHYAGSKALGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=447963 STCNRZ760_RS09460 WP_002952183.1 1809438..1810706(-) (rarA) [Streptococcus thermophilus strain CNRZ760]
ATGCCAGATAATCTTGCTTTACGCATGCGTCCACGTTCAATTTCAGAGGTGATTGGTCAGAAGCATTTAGTTGGTGAAGG
TAAAATTATTCGCCGTATGGTAGAGGCGAATATGCTGTCGTCAATGATTCTCTACGGACCTCCAGGAATCGGGAAAACCT
CGATAGCCAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACTTTTAATGCCACTGTCGATAGCAAAAAACGTCTA
CAGGAAATTGCAGAAGAGGCTAAATTTTCAGGTGGTTTAGTTCTACTTCTAGATGAGATCCATCGTTTGGATAAAGCGAA
ACAAGATTTTTTGTTACCATTATTAGAGAACGGAAATATTATCATGATTGGTGCCACAACCGAGAATCCGTTTTTTTCTG
TGACACCAGCCATCCGTAGCCGTGTACAAATATTTGAGTTGGAACCACTCTCTAATGAAGATATCAAGGAAGCTATTTTG
AATGTTCTAGGGGACAAGGAGCGTGGCTTCGCCTTTGAGGTTCACTTAGATGATGATGCTCTAGATTTTATTGCGACAGC
TACTAATGGTGATTTACGATCGGCATATAATTCTTTGGATCTGGCTGTCATGTCGACACCAGCTTCAGGAAATGGTCAGC
ATCATATTACCTTAGACATAGTGGAAAATAGCTTACAACGCAGTTATATTACTATGGATAAAGACGGTGATGGGCACTAT
GATGTCCTTTCTGCCTTGCAAAAATCTATTCGAGGATCTGATGTTAATGCCAGTCTTCACTATGCGGCACGTTTGGTTGA
GGCAGGGGATTTGCCTAGTCTAGCACGTCGCTTGACTGTGATTGCCTATGAGGATATTGGTTTAGCTAATCCAGATGCAC
AAGTTCACACGGTCACAGCCTTGGAAGCTGCACAGAAAATAGGTTTTCCGGAGGCACGTATTTTGATTGCCAACGTAGTT
ATTGACTTAGCATTATCACCTAAGTCGAATTCGGCTTATAAGGCAATGGATGCTGCCCTGGCGGATCTTAGAAAGTCTGG
GAATTTACCTATTCCGCGTCATCTGAGAGATGGACACTATGCTGGAAGTAAGGCACTGGGTAATGCACAAGATTATAAGT
ATCCACATGCCTATCCTGAAAAGTGGGTTAAGCAACAATACCTTCCAGATAAATTAAGAGGAGTCAATTATTTCCAACCT
AATGAAACTGGGAAATACGAAAGAGCTCTTGGAGCTAATAAAGAACGAATCGATAAGTTATCTAGATAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M295

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.666

99.289

0.592