Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   CARM_RS08495 Genome accession   NZ_CP053825
Coordinates   653305..653388 (+) Length   27 a.a.
NCBI ID   WP_139425164.1    Uniprot ID   -
Organism   Campylobacter armoricus strain CCUG 73571     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 648305..658388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CARM_RS03445 (CARM_0684) mnmC 650225..652060 (+) 1836 WP_139425041.1 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC -
  CARM_RS08420 - 652191..652376 (+) 186 WP_268904550.1 PAS domain-containing protein -
  CARM_RS03455 - 652577..652816 (+) 240 WP_139425044.1 hypothetical protein -
  CARM_RS03460 - 652943..653194 (+) 252 WP_139425046.1 hypothetical protein -
  CARM_RS08495 pilJ 653305..653388 (+) 84 WP_139425164.1 methyl-accepting chemotaxis protein Machinery gene
  CARM_RS03470 (CARM_0687) - 653873..654706 (+) 834 WP_139425048.1 hypothetical protein -
  CARM_RS03475 (CARM_0688) rseP 654703..655809 (-) 1107 WP_139425051.1 RIP metalloprotease RseP -
  CARM_RS03480 (CARM_0689) pgsA 655812..656342 (-) 531 WP_139425053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CARM_RS03485 (CARM_0690) - 656382..657161 (-) 780 WP_139425056.1 enoyl-ACP reductase -
  CARM_RS03490 (CARM_0691) dapA 657161..658057 (-) 897 WP_139425059.1 4-hydroxy-tetrahydrodipicolinate synthase -

Sequence

Protein


Download         Length: 27 a.a.        Molecular weight: 2859.22 Da        Isoelectric Point: 4.3330

>NTDB_id=447936 CARM_RS08495 WP_139425164.1 653305..653388(+) (pilJ) [Campylobacter armoricus strain CCUG 73571]
MEAACAGEYGRGFAVVAEEVRALTEKT

Nucleotide


Download         Length: 84 bp        

>NTDB_id=447936 CARM_RS08495 WP_139425164.1 653305..653388(+) (pilJ) [Campylobacter armoricus strain CCUG 73571]
ATTGAAGCCGCTTGTGCAGGTGAGTATGGTAGAGGTTTTGCTGTGGTTGCTGAGGAGGTTAGAGCTTTGACTGAAAAAAC
TTAA

Domains

Predicted by InterproScan.

Methyl-accepting chemotaxis protein (MCP) signalling domain (MCPsignal)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Synechocystis sp. PCC 6803

59.259

100

0.593