Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   CARM_RS04965 Genome accession   NZ_CP053825
Coordinates   956687..957415 (-) Length   242 a.a.
NCBI ID   WP_139425948.1    Uniprot ID   A0A7L5HL46
Organism   Campylobacter armoricus strain CCUG 73571     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 951687..962415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CARM_RS04925 (CARM_0972) holA 952351..953316 (+) 966 WP_139425962.1 DNA polymerase III subunit delta -
  CARM_RS04930 (CARM_0973) rpsF 953409..953783 (+) 375 WP_139425960.1 30S ribosomal protein S6 -
  CARM_RS04935 (CARM_0974) - 953786..954313 (+) 528 WP_139425958.1 single-stranded DNA-binding protein -
  CARM_RS04940 (CARM_0975) rpsR 954325..954585 (+) 261 WP_039618521.1 30S ribosomal protein S18 -
  CARM_RS04945 (CARM_0976) - 954637..955278 (+) 642 WP_139425956.1 MarC family protein -
  CARM_RS04950 (CARM_0977) - 955260..955682 (-) 423 WP_139425954.1 hypothetical protein -
  CARM_RS04955 (CARM_0978) - 955679..956248 (-) 570 WP_139493269.1 hypothetical protein -
  CARM_RS04960 (CARM_0979) - 956394..956690 (-) 297 WP_139425950.1 hypothetical protein -
  CARM_RS04965 (CARM_0980) proC 956687..957415 (-) 729 WP_139425948.1 pyrroline-5-carboxylate reductase Machinery gene
  CARM_RS04970 (CARM_0981) fliW 957415..957810 (-) 396 WP_139425946.1 flagellar assembly protein FliW -
  CARM_RS04975 (CARM_0982) bamD 957989..958642 (+) 654 WP_139425944.1 outer membrane protein assembly factor BamD -
  CARM_RS04980 (CARM_0983) lon 958642..961026 (+) 2385 WP_139425942.1 endopeptidase La -
  CARM_RS08515 (CARM_0984) - 961039..962409 (-) 1371 WP_139425940.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 26883.62 Da        Isoelectric Point: 9.6103

>NTDB_id=447926 CARM_RS04965 WP_139425948.1 956687..957415(-) (proC) [Campylobacter armoricus strain CCUG 73571]
MSEIYILGNGAMAKAIAKGLEDKYKIIIVARDIKKASCLNFKIISYDNFNLEDKNIILAFKPYALNEVANKLKGKARFVI
SVLANTTFEQLHCIKAQNYVKIMPNIAAEFKASTTPYLMEKSIFKDEILSIINTFGKSFLLQNEKEFDIAMVLSGCVPAF
LAIVAESLANAGVRNGLKNDLSYSLTKSTFESFSAIFTHIHPAIMKEKICSPAGVTIKGIEALEKRALRGVFFEAFEASM
RK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=447926 CARM_RS04965 WP_139425948.1 956687..957415(-) (proC) [Campylobacter armoricus strain CCUG 73571]
ATGTCTGAAATTTATATTTTAGGAAATGGTGCTATGGCAAAAGCTATAGCTAAAGGCTTGGAAGATAAATATAAAATAAT
TATTGTGGCTAGAGATATAAAAAAAGCTAGTTGTTTGAATTTTAAAATTATATCTTATGATAATTTTAATTTAGAAGATA
AAAATATTATTTTAGCTTTTAAACCTTATGCGTTAAATGAAGTAGCTAATAAATTAAAAGGTAAAGCTAGATTTGTTATT
TCTGTTTTAGCAAATACTACTTTTGAGCAGTTGCATTGTATTAAAGCACAAAATTATGTAAAAATTATGCCAAATATTGC
AGCAGAATTTAAAGCTTCTACAACTCCTTATTTAATGGAAAAAAGTATTTTTAAAGATGAAATTTTATCAATTATAAATA
CTTTTGGTAAATCTTTTTTGCTTCAAAATGAAAAAGAATTTGATATTGCTATGGTTTTAAGCGGTTGTGTTCCAGCATTT
TTAGCTATAGTAGCAGAAAGCCTAGCAAATGCAGGTGTTAGGAATGGACTTAAAAATGATTTAAGTTACAGCTTGACAAA
ATCGACATTTGAAAGTTTTTCCGCGATATTTACTCATATCCATCCAGCTATCATGAAAGAAAAAATTTGTTCTCCAGCAG
GAGTGACTATAAAAGGAATCGAGGCTTTAGAAAAAAGAGCTTTAAGAGGTGTCTTTTTCGAAGCTTTTGAAGCAAGTATG
AGAAAATGA

Domains

Predicted by InterproScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-84)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(144-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L5HL46

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

58.264

100

0.583