Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HPY10_RS20450 Genome accession   NZ_CP053822
Coordinates   186447..187307 (-) Length   286 a.a.
NCBI ID   WP_095462309.1    Uniprot ID   -
Organism   Vibrio cholerae strain E7G     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 181447..192307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY10_RS00875 (HPY10_00875) gspL 181705..182916 (+) 1212 WP_162813538.1 type II secretion system protein GspL -
  HPY10_RS00880 (HPY10_00880) gspM 182926..183423 (+) 498 WP_002044746.1 type II secretion system protein M -
  HPY10_RS00885 (HPY10_00885) - 183425..184183 (+) 759 WP_002044745.1 type II secretion system protein N -
  HPY10_RS00890 (HPY10_00890) cysQ 184235..185062 (-) 828 WP_000106799.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  HPY10_RS00895 (HPY10_00895) nudE 185085..185633 (-) 549 WP_175245872.1 ADP compounds hydrolase NudE -
  HPY10_RS00900 (HPY10_00900) nfuA 185772..186359 (-) 588 WP_000070178.1 Fe-S biogenesis protein NfuA -
  HPY10_RS20450 comF 186447..187307 (-) 861 WP_095462309.1 ComF family protein Machinery gene
  HPY10_RS00915 (HPY10_00915) bioH 187243..188004 (+) 762 WP_162810928.1 pimeloyl-ACP methyl ester esterase BioH -
  HPY10_RS00920 (HPY10_00920) - 188160..188630 (+) 471 WP_000961393.1 hypothetical protein -
  HPY10_RS00925 (HPY10_00925) - 188725..191046 (-) 2322 WP_175245873.1 Tex family protein -
  HPY10_RS00930 (HPY10_00930) - 191291..191431 (+) 141 Protein_166 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32532.47 Da        Isoelectric Point: 7.9185

>NTDB_id=447910 HPY10_RS20450 WP_095462309.1 186447..187307(-) (comF) [Vibrio cholerae strain E7G]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSISIFIHSANWQDEAHYPDSWLAMLTHWLRKTTAPLLTPECHLCRLALDTNSP
FGVCTACQAWLEHGYRCARCGLPTLTPVEQCGQCLSQPPPWRKLMCVGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLATQ
INEPAPLLCSVPLHWRRRWQRGFNQSDLLARELANVLNIEYDHQLFARCRATPHQQGLSKAQRIHNLRDAFVLNHPPNQP
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=447910 HPY10_RS20450 WP_095462309.1 186447..187307(-) (comF) [Vibrio cholerae strain E7G]
ATGCCCCAGCCGTGTACCAATACCAGATCTTGCCCTTGTCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
GTCTATTTCCATCTTCATCCACTCAGCCAATTGGCAAGATGAAGCACATTACCCTGATTCTTGGCTCGCTATGTTAACCC
ATTGGCTCAGAAAAACTACCGCACCACTGCTGACTCCGGAATGTCATCTCTGCCGACTGGCGCTCGATACAAATTCGCCG
TTTGGCGTCTGCACCGCCTGCCAAGCTTGGCTTGAGCACGGCTATCGCTGCGCACGCTGCGGTTTACCAACTCTTACCCC
TGTTGAACAATGCGGACAGTGTTTGAGTCAGCCTCCGCCGTGGCGAAAACTGATGTGTGTCGGCGATTACCGCTTTCCAC
TCAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCGCGCTTGGCTAAGCTACTCGCCACCCAG
ATTAACGAGCCAGCCCCGTTGCTGTGCAGTGTACCGCTGCATTGGCGGCGACGTTGGCAACGCGGCTTTAATCAAAGCGA
TCTGCTGGCACGTGAATTAGCCAATGTGCTGAACATTGAATATGACCACCAACTCTTTGCACGCTGCCGAGCCACACCGC
ATCAACAAGGACTCAGCAAGGCGCAGCGAATACACAACCTACGCGATGCGTTTGTGCTGAATCATCCGCCAAACCAACCA
CATGTTGCGATTGTGGACGATGTGGTGACCACAGGCAGTACGATCCGACATTTATGCGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCCACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(234-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

97.902

100

0.979
  comF Vibrio campbellii strain DS40M4

46.639

83.217

0.388