Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HPY11_RS19555 Genome accession   NZ_CP053820
Coordinates   205909..206769 (-) Length   286 a.a.
NCBI ID   WP_095462309.1    Uniprot ID   -
Organism   Vibrio cholerae strain SA10G     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 200909..211769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY11_RS00980 (HPY11_00980) gspL 201167..202378 (+) 1212 WP_162813538.1 type II secretion system protein GspL -
  HPY11_RS00985 (HPY11_00985) gspM 202388..202885 (+) 498 WP_002044746.1 type II secretion system protein M -
  HPY11_RS00990 (HPY11_00990) - 202887..203645 (+) 759 WP_002044745.1 type II secretion system protein N -
  HPY11_RS00995 (HPY11_00995) cysQ 203697..204524 (-) 828 WP_000106799.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  HPY11_RS01000 (HPY11_01000) nudE 204547..205095 (-) 549 WP_175245872.1 ADP compounds hydrolase NudE -
  HPY11_RS01005 (HPY11_01005) nfuA 205234..205821 (-) 588 WP_000070178.1 Fe-S biogenesis protein NfuA -
  HPY11_RS19555 comF 205909..206769 (-) 861 WP_095462309.1 ComF family protein Machinery gene
  HPY11_RS01020 (HPY11_01020) bioH 206705..207466 (+) 762 WP_162810928.1 pimeloyl-ACP methyl ester esterase BioH -
  HPY11_RS01025 (HPY11_01025) - 207622..208092 (+) 471 WP_000961393.1 hypothetical protein -
  HPY11_RS01030 (HPY11_01030) - 208187..210508 (-) 2322 WP_175245873.1 Tex family protein -
  HPY11_RS01035 (HPY11_01035) - 210753..210893 (+) 141 Protein_188 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32532.47 Da        Isoelectric Point: 7.9185

>NTDB_id=447862 HPY11_RS19555 WP_095462309.1 205909..206769(-) (comF) [Vibrio cholerae strain SA10G]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSISIFIHSANWQDEAHYPDSWLAMLTHWLRKTTAPLLTPECHLCRLALDTNSP
FGVCTACQAWLEHGYRCARCGLPTLTPVEQCGQCLSQPPPWRKLMCVGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLATQ
INEPAPLLCSVPLHWRRRWQRGFNQSDLLARELANVLNIEYDHQLFARCRATPHQQGLSKAQRIHNLRDAFVLNHPPNQP
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=447862 HPY11_RS19555 WP_095462309.1 205909..206769(-) (comF) [Vibrio cholerae strain SA10G]
ATGCCCCAGCCGTGTACCAATACCAGATCTTGCCCTTGTCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
GTCTATTTCCATCTTCATCCACTCAGCCAATTGGCAAGATGAAGCACATTACCCTGATTCTTGGCTCGCTATGTTAACCC
ATTGGCTCAGAAAAACTACCGCACCACTGCTGACTCCGGAATGTCATCTCTGCCGACTGGCGCTCGATACAAATTCGCCG
TTTGGCGTCTGCACCGCCTGCCAAGCTTGGCTTGAGCACGGCTATCGCTGCGCACGCTGCGGTTTACCAACTCTTACCCC
TGTTGAACAATGCGGACAGTGTTTGAGTCAGCCTCCGCCGTGGCGAAAACTGATGTGTGTCGGCGATTACCGCTTTCCAC
TCAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCGCGCTTGGCTAAGCTACTCGCCACCCAG
ATTAACGAGCCAGCCCCGTTGCTGTGCAGTGTACCGCTGCATTGGCGGCGACGTTGGCAACGCGGCTTTAATCAAAGCGA
TCTGCTGGCACGTGAATTAGCCAATGTGCTGAACATTGAATATGACCACCAACTCTTTGCACGCTGCCGAGCCACACCGC
ATCAACAAGGACTCAGCAAGGCGCAGCGAATACACAACCTACGCGATGCGTTTGTGCTGAATCATCCGCCAAACCAACCA
CATGTTGCGATTGTGGACGATGTGGTGACCACAGGCAGTACGATCCGACATTTATGCGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCCACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(234-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

97.902

100

0.979
  comF Vibrio campbellii strain DS40M4

46.639

83.217

0.388