Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HPY11_RS11115 Genome accession   NZ_CP053820
Coordinates   2493406..2493924 (-) Length   172 a.a.
NCBI ID   WP_175246206.1    Uniprot ID   -
Organism   Vibrio cholerae strain SA10G     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2488406..2498924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY11_RS11090 (HPY11_11140) rimM 2488515..2489069 (-) 555 WP_175246205.1 ribosome maturation factor RimM -
  HPY11_RS11095 (HPY11_11145) rpsP 2489097..2489345 (-) 249 WP_000256449.1 30S ribosomal protein S16 -
  HPY11_RS11100 (HPY11_11150) ffh 2489581..2490966 (-) 1386 WP_114708661.1 signal recognition particle protein -
  HPY11_RS11105 (HPY11_11155) - 2491179..2491973 (+) 795 WP_000369278.1 inner membrane protein YpjD -
  HPY11_RS11110 (HPY11_11160) - 2492056..2493336 (+) 1281 WP_000340990.1 HlyC/CorC family transporter -
  HPY11_RS11115 (HPY11_11165) luxS 2493406..2493924 (-) 519 WP_175246206.1 S-ribosylhomocysteine lyase Regulator
  HPY11_RS11120 (HPY11_11170) gshA 2493973..2495547 (-) 1575 WP_175246207.1 glutamate--cysteine ligase -
  HPY11_RS11125 (HPY11_11175) - 2495659..2498514 (-) 2856 WP_175246208.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19108.02 Da        Isoelectric Point: 5.9127

>NTDB_id=447852 HPY11_RS11115 WP_175246206.1 2493406..2493924(-) (luxS) [Vibrio cholerae strain SA10G]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKVIAKNVIAAGISVNRNDELA
LPESMLNKLKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=447852 HPY11_RS11115 WP_175246206.1 2493406..2493924(-) (luxS) [Vibrio cholerae strain SA10G]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACCCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACAATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGCAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTATTGAAAGTTGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCGCTGGAAGAAGCCAAAGTGATTGCGAAAAACGTGATTGCGGCAGGCATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATAAGCTCAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

98.837

100

0.988