Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ST90729_RS09380 Genome accession   NZ_CP065480
Coordinates   1815383..1816651 (-) Length   422 a.a.
NCBI ID   WP_022097049.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 90729     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1810383..1821651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST90729_RS09345 (ST90729_09335) - 1810700..1812241 (+) 1542 WP_232976075.1 ABC transporter ATP-binding protein -
  ST90729_RS09350 - 1812374..1812593 (+) 220 Protein_1784 hypothetical protein -
  ST90729_RS09355 (ST90729_09340) - 1812623..1813600 (+) 978 WP_011226670.1 replication initiation protein -
  ST90729_RS09360 (ST90729_09345) - 1813612..1813800 (+) 189 WP_000369785.1 DUF3173 domain-containing protein -
  ST90729_RS09365 (ST90729_09350) - 1813802..1814941 (+) 1140 WP_011226671.1 site-specific integrase -
  ST90729_RS09380 (ST90729_09365) rarA 1815383..1816651 (-) 1269 WP_022097049.1 replication-associated recombination protein A Machinery gene
  ST90729_RS09385 (ST90729_09370) rpmB 1816821..1817009 (+) 189 WP_002952184.1 50S ribosomal protein L28 -
  ST90729_RS09390 (ST90729_09375) - 1817136..1817402 (+) 267 WP_002952186.1 IreB family regulatory phosphoprotein -
  ST90729_RS09395 (ST90729_09380) ruvX 1817402..1817821 (+) 420 WP_002952187.1 Holliday junction resolvase RuvX -
  ST90729_RS09400 (ST90729_09385) - 1817930..1818235 (+) 306 WP_002952188.1 DUF1292 domain-containing protein -
  ST90729_RS09405 (ST90729_09390) - 1818448..1820094 (+) 1647 WP_347116624.1 hypothetical protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46477.95 Da        Isoelectric Point: 6.7339

>NTDB_id=447749 ST90729_RS09380 WP_022097049.1 1815383..1816651(-) (rarA) [Streptococcus thermophilus strain 90729]
MPDNLALRMRPRSISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
NVLGDKERGFAFEVHLDDDALDFIATATNGDLRSAYNSLDLAVMSTPASGNGQHHITLDIVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYKAMDAALADLRKSGNLPIPRHLRDGHYAGSKELGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=447749 ST90729_RS09380 WP_022097049.1 1815383..1816651(-) (rarA) [Streptococcus thermophilus strain 90729]
ATGCCAGATAATCTTGCTTTACGCATGCGTCCACGTTCAATTTCAGAGGTGATTGGTCAGAAGCATTTAGTTGGTGAAGG
TAAAATTATTCGCCGTATGGTAGAGGCGAATATGCTGTCGTCAATGATTCTCTACGGACCTCCAGGAATCGGGAAAACCT
CGATAGCCAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACTTTTAATGCCACTGTCGATAGCAAAAAACGTCTA
CAGGAAATTGCAGAAGAGGCTAAATTTTCAGGTGGTTTAGTTCTACTTTTAGATGAGATCCATCGTTTGGATAAAGCGAA
ACAAGATTTTTTGTTACCATTATTAGAGAACGGAAATATTATCATGATTGGTGCCACAACCGAGAATCCGTTTTTTTCTG
TGACACCAGCCATCCGTAGCCGTGTACAAATATTTGAGTTGGAACCACTCTCTAATGAAGATATCAAGGAAGCTATTTTG
AATGTTCTAGGGGACAAGGAGCGTGGCTTCGCCTTTGAGGTTCACTTAGATGATGATGCTCTAGATTTTATTGCGACAGC
TACTAATGGTGATTTACGATCGGCATATAATTCTTTGGATCTGGCTGTCATGTCGACACCAGCTTCAGGAAATGGGCAGC
ATCATATTACTTTAGACATAGTTGAAAATAGCTTACAACGCAGTTATATTACTATGGATAAAGACGGTGATGGGCACTAT
GATGTCCTTTCTGCCTTGCAAAAATCTATTCGAGGATCTGATGTTAATGCCAGTCTTCACTATGCGGCACGTTTGGTTGA
GGCAGGGGATTTGCCTAGTCTAGCACGTCGCTTGACTGTAATTGCCTATGAGGATATTGGTTTAGCTAATCCAGATGCAC
AAGTTCACACGGTCACAGCCTTGGAAGCTGCACAGAAAATAGGTTTTCCGGAGGCACGTATTTTGATTGCCAACGTAGTT
ATTGACTTAGCATTATCACCTAAGTCGAATTCGGCTTATAAGGCAATGGATGCTGCCCTGGCGGATCTTAGAAAATCAGG
GAATTTACCGATTCCTCGTCATTTGAGAGATGGACACTATGCTGGAAGCAAGGAACTGGGCAATGCACAAGATTATAAGT
ATCCACATGCCTATCCTGAAAAGTGGGTTAAGCAACAATACCTTCCGGATAAATTAAGAGGTGTGAATTATTTCCAACCC
AATGAAACCGGGAAATATGAAAGAGCTCTTGGAGCTAATAAAGAACGAATCGATAAGTTATCTAGATAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.905

99.289

0.595