Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HPY05_RS21645 Genome accession   NZ_CP053810
Coordinates   187825..188685 (-) Length   286 a.a.
NCBI ID   WP_080099828.1    Uniprot ID   -
Organism   Vibrio cholerae strain W6G     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 182825..193685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY05_RS00875 (HPY05_00875) gspL 183083..184294 (+) 1212 WP_071179790.1 type II secretion system protein GspL -
  HPY05_RS00880 (HPY05_00880) gspM 184304..184801 (+) 498 WP_000661347.1 type II secretion system protein M -
  HPY05_RS00885 (HPY05_00885) - 184803..185561 (+) 759 WP_057563692.1 type II secretion system protein N -
  HPY05_RS00890 (HPY05_00890) cysQ 185613..186440 (-) 828 WP_071179789.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  HPY05_RS00895 (HPY05_00895) nudE 186463..187011 (-) 549 WP_000095817.1 ADP compounds hydrolase NudE -
  HPY05_RS00900 (HPY05_00900) nfuA 187150..187737 (-) 588 WP_000070178.1 Fe-S biogenesis protein NfuA -
  HPY05_RS21645 comF 187825..188685 (-) 861 WP_080099828.1 ComF family protein Machinery gene
  HPY05_RS00915 (HPY05_00915) bioH 188621..189382 (+) 762 WP_001240449.1 pimeloyl-ACP methyl ester esterase BioH -
  HPY05_RS00920 (HPY05_00920) - 189544..190014 (+) 471 WP_000961393.1 hypothetical protein -
  HPY05_RS00925 (HPY05_00925) - 190109..192430 (-) 2322 WP_175245873.1 Tex family protein -
  HPY05_RS00930 (HPY05_00930) greB 192675..193157 (+) 483 WP_000850492.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32527.43 Da        Isoelectric Point: 8.0588

>NTDB_id=447721 HPY05_RS21645 WP_080099828.1 187825..188685(-) (comF) [Vibrio cholerae strain W6G]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSISIFIHSANWQDEAHYPDSWLAMLTHWLRKTTAPLLTPECHLCRLALDTNSP
FGVCSACQAWLEHGYRCARCGLPTLTPVDQCGQCLGQPPPWRKLMCVGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLATQ
INEPAPLLCSVPLHWRRRWQRGFNQSDLLARELANVLNIEYDHQLFARRRATPHQQGLSKAQRIHNLRDAFVLNHPPNQP
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=447721 HPY05_RS21645 WP_080099828.1 187825..188685(-) (comF) [Vibrio cholerae strain W6G]
ATGCCCCAGCCGTGTACCAATACCAGATCTTGCCCTTGTCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
GTCTATTTCCATCTTCATCCACTCTGCCAATTGGCAAGATGAAGCACATTACCCCGATTCTTGGCTCGCTATGTTAACCC
ATTGGCTCAGAAAAACTACCGCACCACTACTCACCCCGGAATGTCATCTCTGCCGACTGGCGCTCGATACAAATTCGCCG
TTTGGCGTCTGCTCTGCCTGCCAAGCTTGGCTTGAGCACGGTTATCGCTGCGCACGCTGCGGTTTACCGACTCTTACCCC
TGTTGATCAGTGCGGGCAGTGTTTGGGTCAGCCTCCGCCGTGGCGAAAACTGATGTGTGTCGGCGATTACCGCTTCCCAC
TTAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCGCGCTTGGCTAAGCTACTCGCCACCCAG
ATTAACGAGCCCGCCCCTTTGCTGTGCAGCGTGCCACTGCATTGGCGGCGACGCTGGCAACGCGGCTTTAATCAAAGCGA
TCTGCTGGCACGTGAATTAGCCAATGTGCTGAACATTGAATATGACCACCAACTCTTTGCACGCCGCCGAGCCACACCGC
ATCAACAAGGACTCAGCAAGGCACAGCGAATCCACAACCTACGTGATGCGTTTGTGCTGAATCATCCGCCAAACCAACCA
CATGTTGCGATTGTGGACGATGTGGTGACCACAGGCAGTACGATCCGACATTTATGCGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCCACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

99.301

100

0.993
  comF Vibrio campbellii strain DS40M4

46.639

83.217

0.388