Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   HPY05_RS01405 Genome accession   NZ_CP053810
Coordinates   302050..302682 (-) Length   210 a.a.
NCBI ID   WP_000242749.1    Uniprot ID   A0A6G8D3R0
Organism   Vibrio cholerae strain W6G     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 297050..307682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY05_RS01385 (HPY05_01385) - 297200..298411 (+) 1212 WP_000215480.1 aspartate aminotransferase family protein -
  HPY05_RS01390 (HPY05_01390) astA 298551..299570 (+) 1020 WP_175246735.1 arginine N-succinyltransferase -
  HPY05_RS01395 (HPY05_01395) astD 299580..301037 (+) 1458 WP_175246736.1 succinylglutamate-semialdehyde dehydrogenase -
  HPY05_RS01400 (HPY05_01400) - 301180..301971 (+) 792 WP_000189091.1 DUF1338 domain-containing protein -
  HPY05_RS01405 (HPY05_01405) crp 302050..302682 (-) 633 WP_000242749.1 cAMP-activated global transcriptional regulator CRP Regulator
  HPY05_RS01410 (HPY05_01410) - 302925..303794 (-) 870 WP_001274669.1 phosphoribulokinase -
  HPY05_RS01415 (HPY05_01415) - 303889..304098 (-) 210 WP_000586572.1 YheU family protein -
  HPY05_RS01420 (HPY05_01420) - 304207..305196 (-) 990 WP_175246737.1 hydrolase -
  HPY05_RS01425 (HPY05_01425) - 305193..305678 (-) 486 WP_001278735.1 TIGR02444 family protein -
  HPY05_RS01430 (HPY05_01430) - 305679..307595 (-) 1917 WP_000627681.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23635.45 Da        Isoelectric Point: 8.2784

>NTDB_id=447690 HPY05_RS01405 WP_000242749.1 302050..302682(-) (crp) [Vibrio cholerae strain W6G]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKTPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLARQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=447690 HPY05_RS01405 WP_000242749.1 302050..302682(-) (crp) [Vibrio cholerae strain W6G]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCATCAAA
AAGCACGTTGATCCACGCCGGTGAAAAAGCGGAAACGCTGTACTACATCGTGAAAGGTTCAGTGGCGGTACTGATTAAAG
ATGAAGAAGGTAAAGAGATGATCCTCTCTTACCTGAACCAAGGTGATTTTATCGGTGAACTTGGCTTGTTTGAAGAAGGC
CAAGAACGTACCGCTTGGGTTCGTGCTAAAACACCTTGTGAAGTGGCTGAAATCTCATTTAAGAAATTCCGTCAATTGAT
CCAAGTAAACCCAGATATCTTGATGCGCCTTTCAGGTCAAATGGCTCGTCGTCTGCAAGTGACTAGCCAGAAAGTTGGCG
ACCTTGCGTTCCTAGACGTAACGGGCCGTATCGCTCAAACTCTGCTGAACCTTGCGCGTCAGCCAGATGCGATGACTCAC
CCTGACGGCATGCAAATCAAGATCACTCGCCAAGAGATCGGTCAAATTGTTGGCTGTTCTCGCGAAACCGTTGGCCGCAT
CCTGAAGATGCTGGAAGAGCAGAACCTGATCTCTGCCCACGGTAAAACCATCGTGGTTTACGGCACTCGCTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8D3R0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

100

100

1
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467