Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HPY08_RS19370 Genome accession   NZ_CP053808
Coordinates   186438..187298 (-) Length   286 a.a.
NCBI ID   WP_367889797.1    Uniprot ID   -
Organism   Vibrio cholerae strain SP7G     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 181438..192298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY08_RS00865 (HPY08_00865) gspL 181696..182907 (+) 1212 WP_175242451.1 type II secretion system protein GspL -
  HPY08_RS00870 (HPY08_00870) gspM 182917..183414 (+) 498 WP_000661347.1 type II secretion system protein M -
  HPY08_RS00875 (HPY08_00875) - 183416..184174 (+) 759 WP_057563692.1 type II secretion system protein N -
  HPY08_RS00880 (HPY08_00880) cysQ 184226..185053 (-) 828 WP_000106799.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  HPY08_RS00885 (HPY08_00885) nudE 185076..185624 (-) 549 WP_000095812.1 ADP compounds hydrolase NudE -
  HPY08_RS00890 (HPY08_00890) nfuA 185763..186350 (-) 588 WP_000070178.1 Fe-S biogenesis protein NfuA -
  HPY08_RS19370 comF 186438..187298 (-) 861 WP_367889797.1 phosphoribosyltransferase family protein Machinery gene
  HPY08_RS00905 (HPY08_00905) bioH 187234..187995 (+) 762 WP_175242772.1 pimeloyl-ACP methyl ester esterase BioH -
  HPY08_RS00910 (HPY08_00910) - 188118..188588 (+) 471 WP_000961393.1 hypothetical protein -
  HPY08_RS00915 (HPY08_00915) - 188683..191004 (-) 2322 WP_175242452.1 Tex family protein -
  HPY08_RS00920 (HPY08_00920) greB 191249..191731 (+) 483 WP_000850494.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32502.42 Da        Isoelectric Point: 8.0588

>NTDB_id=447674 HPY08_RS19370 WP_367889797.1 186438..187298(-) (comF) [Vibrio cholerae strain SP7G]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSISIFIHSANWQDEAHYTDSWLAMLTHWLRKTTAPLLTPECHLCRLALDTNSP
FGVCSACQAWLEHGYRCARCGLPTLTPVDQCGQCLGQPPPWRKLMCVGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLATQ
INDPAPLLCSVPLHWRRRWLRGFNQSDLLARELANVLNIEYDHQLFARRRATPHQQGLSKAQRIHNLRDAFVLNHPPNQP
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=447674 HPY08_RS19370 WP_367889797.1 186438..187298(-) (comF) [Vibrio cholerae strain SP7G]
ATGCCCCAGCCGTGTACCAATACCAGATCTTGCCCTTGTCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
GTCTATTTCCATCTTCATCCACTCTGCCAATTGGCAAGATGAAGCACATTACACCGATTCTTGGCTCGCTATGTTAACCC
ATTGGCTCAGAAAAACTACCGCACCACTGCTGACTCCGGAATGTCATCTCTGCCGACTGGCACTCGATACAAATTCGCCG
TTTGGCGTCTGCTCTGCCTGCCAAGCTTGGCTTGAGCACGGTTATCGCTGCGCACGCTGCGGTTTACCGACTCTTACCCC
TGTTGATCAGTGCGGGCAGTGTTTGGGTCAGCCTCCGCCGTGGCGAAAACTGATGTGTGTCGGCGATTACCGCTTCCCAC
TCAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCGCGCTTGGCTAAGCTGCTCGCCACCCAG
ATTAACGATCCAGCCCCGTTGCTGTGCAGTGTACCGCTGCATTGGCGGCGACGTTGGCTACGCGGCTTTAATCAAAGCGA
TCTGCTGGCGCGCGAGTTAGCCAATGTGCTGAACATTGAATATGACCACCAACTCTTTGCACGCCGCCGAGCCACACCGC
ATCAACAAGGACTCAGCAAGGCGCAGCGAATCCACAACCTACGTGATGCGTTTGTGCTCAATCATCCGCCAAACCAACCA
CATGTTGCGATTGTGGACGATGTGGTGACCACAGGCAGTACGATCCGACATTTATGCGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCCACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

98.252

100

0.983
  comF Vibrio campbellii strain DS40M4

46.639

83.217

0.388