Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ST90729_RS02235 Genome accession   NZ_CP065480
Coordinates   407647..409461 (+) Length   604 a.a.
NCBI ID   WP_347116699.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 90729     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 402647..414461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST90729_RS02210 (ST90729_02215) - 402721..403475 (-) 755 Protein_374 NUDIX hydrolase -
  ST90729_RS02215 (ST90729_02220) - 403539..404645 (-) 1107 Protein_375 AAA family ATPase -
  ST90729_RS02220 (ST90729_02225) gdhA 404989..406341 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  ST90729_RS02225 (ST90729_02230) - 406599..407009 (+) 411 WP_011680804.1 peptide deformylase -
  ST90729_RS02230 (ST90729_02235) rcrR 407200..407643 (+) 444 WP_002945408.1 MarR family transcriptional regulator Regulator
  ST90729_RS02235 (ST90729_02240) rcrP 407647..409461 (+) 1815 WP_347116699.1 ABC transporter ATP-binding protein Regulator
  ST90729_RS02240 (ST90729_02245) rcrQ 409451..411229 (+) 1779 WP_232975654.1 ABC transporter ATP-binding protein Regulator
  ST90729_RS02245 - 412103..412942 (+) 840 Protein_381 HAMP domain-containing sensor histidine kinase -
  ST90729_RS02250 (ST90729_02255) pyrH 413178..413915 (+) 738 WP_002949867.1 UMP kinase -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67221.84 Da        Isoelectric Point: 5.2000

>NTDB_id=447670 ST90729_RS02235 WP_347116699.1 407647..409461(+) (rcrP) [Streptococcus thermophilus strain 90729]
MFKIFKRLTAKELSMIVLAVIFVCLNVYLNLKIPDYMSDIITLLSTKETKASDIFAWNTDAPGMRMLLMSFAGFMASVVV
SFLAARTASSFTTRLRDDIFHQVLDFSDAEIKKFSIPSLLTRTTNDITQLQMALTMGLQVITQGPIMAIWAITKIADKNG
NWLLALLVAVAVIAILMLFLLIMVMPKQRLIQTLTDKLNSVTRESLTGIRVVRAYNAESYQEDKFEKANTDLTQNNLFIG
RSFALLTPVMTAVSSGLTLAIYWIGAHLIEDVKIPTDPTKIADAMEDKVHLFSDMVVYSSYAMQVVMGFMMMMVVFFLLP
RAVVAAGRINEVLDTQSSVSYPEYSSEKPKEVGTVEFEDVSFRYSETSEPVLEHVSFKAKKGDTVALIGSTGSGKSTLVN
LIPRFYDATQGTIKVDGVDVRYYDHETLHNIVGYIPQKAVLFSGDITSNMTMGTSNNSPLDDAKIWEALELAQGKDFVEN
KEGQLKAEVAQAGSNFSGGQKQRLAIARALARKPEILIFDDSFSALDYKTDRKLRQELAEKTQDMTKLIVAQRISTIMDA
DQILVLDKGKVVGQGTHEELLANNEVYQEIAYSQLSKEELEDGK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=447670 ST90729_RS02235 WP_347116699.1 407647..409461(+) (rcrP) [Streptococcus thermophilus strain 90729]
ATGTTTAAAATTTTTAAACGTTTGACGGCAAAAGAGTTAAGTATGATTGTCTTAGCTGTGATATTTGTTTGTTTGAACGT
CTATCTAAACTTGAAAATTCCAGACTATATGTCTGACATTATAACCCTCTTATCAACCAAGGAGACTAAGGCATCGGATA
TTTTTGCTTGGAATACGGATGCCCCAGGGATGCGAATGCTTTTAATGTCTTTTGCGGGCTTTATGGCCTCTGTAGTGGTT
AGTTTTCTAGCTGCCAGAACAGCATCTAGTTTTACCACTCGTCTTCGTGATGATATCTTCCATCAGGTTTTAGATTTTTC
GGATGCCGAGATTAAGAAATTCTCTATTCCTAGTCTTTTGACCCGTACGACAAACGATATTACACAATTACAGATGGCAC
TGACCATGGGGTTACAGGTTATTACACAGGGACCTATTATGGCAATCTGGGCTATTACAAAGATTGCTGATAAAAATGGT
AATTGGCTTCTTGCCTTGCTTGTGGCTGTGGCAGTAATTGCCATTCTTATGCTCTTCCTCTTGATTATGGTCATGCCTAA
GCAACGTTTGATTCAGACTCTGACAGATAAACTCAATAGTGTGACGCGTGAATCTCTTACTGGGATTCGTGTGGTGCGTG
CCTATAACGCCGAGAGTTATCAAGAGGATAAGTTTGAAAAGGCCAATACTGATCTAACCCAAAACAATCTTTTCATCGGT
CGTTCTTTTGCCTTGCTGACACCGGTAATGACTGCTGTATCTAGTGGTTTGACGCTAGCTATTTATTGGATTGGTGCGCA
TCTGATTGAAGATGTTAAGATTCCAACAGATCCAACTAAGATTGCTGATGCCATGGAAGACAAGGTTCATCTCTTCTCAG
ACATGGTGGTTTACTCATCTTATGCCATGCAGGTTGTTATGGGATTCATGATGATGATGGTTGTCTTCTTCCTTCTTCCA
CGAGCAGTTGTAGCAGCTGGACGTATCAATGAAGTTTTAGATACTCAATCTTCAGTTTCTTACCCTGAATATAGTTCTGA
AAAGCCTAAAGAAGTCGGAACTGTTGAATTTGAAGACGTTTCCTTCCGTTATTCTGAAACTTCAGAGCCTGTTTTGGAGC
ATGTTAGCTTCAAAGCTAAAAAAGGAGATACGGTTGCTCTTATTGGTTCGACTGGATCTGGTAAATCAACTCTTGTCAAC
CTTATCCCACGTTTTTACGATGCAACGCAAGGAACTATAAAGGTCGATGGTGTAGATGTGAGATATTACGATCACGAAAC
CTTGCACAATATTGTTGGTTATATTCCACAAAAGGCAGTACTTTTCTCAGGAGACATCACGTCAAATATGACGATGGGAA
CCAGCAATAACAGCCCTCTTGATGACGCTAAAATTTGGGAAGCTCTCGAATTGGCTCAAGGAAAAGACTTTGTTGAAAAT
AAAGAAGGTCAACTTAAGGCAGAAGTGGCTCAAGCTGGGTCTAACTTCTCAGGTGGTCAGAAACAACGTCTGGCTATTGC
GCGTGCACTTGCTCGTAAGCCTGAAATCTTGATCTTTGACGACTCCTTCTCAGCTTTGGACTATAAGACCGATCGCAAGT
TGCGTCAAGAATTGGCTGAAAAAACACAAGATATGACCAAGTTGATTGTTGCGCAACGCATCTCTACTATTATGGATGCT
GACCAAATCTTAGTTCTTGATAAAGGTAAGGTCGTTGGTCAAGGAACCCACGAGGAACTCTTGGCTAATAATGAGGTTTA
CCAAGAAATTGCCTATTCACAATTGTCTAAGGAGGAGTTAGAAGATGGAAAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(372-522)

ABC transporter transmembrane region (ABC_membrane)

(18-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

67.273

100

0.674