Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HPY07_RS19670 Genome accession   NZ_CP053806
Coordinates   187819..188679 (-) Length   286 a.a.
NCBI ID   WP_114710374.1    Uniprot ID   -
Organism   Vibrio cholerae strain SP6G     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 182819..193679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY07_RS00875 (HPY07_00875) gspL 183077..184288 (+) 1212 WP_175241812.1 type II secretion system protein GspL -
  HPY07_RS00880 (HPY07_00880) gspM 184298..184795 (+) 498 WP_000661347.1 type II secretion system protein M -
  HPY07_RS00885 (HPY07_00885) - 184797..185555 (+) 759 WP_000817150.1 type II secretion system protein N -
  HPY07_RS00890 (HPY07_00890) cysQ 185607..186434 (-) 828 WP_000106799.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  HPY07_RS00895 (HPY07_00895) nudE 186457..187005 (-) 549 WP_000095812.1 ADP compounds hydrolase NudE -
  HPY07_RS00900 (HPY07_00900) nfuA 187144..187731 (-) 588 WP_000070178.1 Fe-S biogenesis protein NfuA -
  HPY07_RS19670 comF 187819..188679 (-) 861 WP_114710374.1 ComF family protein Machinery gene
  HPY07_RS00915 (HPY07_00915) bioH 188615..189376 (+) 762 WP_162806867.1 pimeloyl-ACP methyl ester esterase BioH -
  HPY07_RS00920 (HPY07_00920) - 189538..190008 (+) 471 WP_000961393.1 hypothetical protein -
  HPY07_RS00925 (HPY07_00925) - 190103..192424 (-) 2322 WP_114710311.1 Tex family protein -
  HPY07_RS00930 (HPY07_00930) greB 192670..193152 (+) 483 WP_000850494.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32539.49 Da        Isoelectric Point: 8.0588

>NTDB_id=447626 HPY07_RS19670 WP_114710374.1 187819..188679(-) (comF) [Vibrio cholerae strain SP6G]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSISIFIHSANWQDEAHYPDSWLAMLTHWLRKTTAPLLTPECHLCRLALDRNSP
FGVCSACQAWLEHGYRCARCGLPTLTPVDQCGQCLGQPPPWRKLMCVGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLATQ
INEPAPLLCSVPLHWQRRWLRGFNQSDLLARELANVLNIEYDHQLFARRRATPHQQGLSKAQRIHNLRDAFVLNHPPNQP
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=447626 HPY07_RS19670 WP_114710374.1 187819..188679(-) (comF) [Vibrio cholerae strain SP6G]
ATGCCCCAGCCGTGTACCAATACCAGATCTTGCCCTTGTCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
GTCTATTTCCATCTTCATCCACTCTGCCAATTGGCAAGATGAAGCACATTACCCCGATTCTTGGCTCGCTATGTTAACCC
ATTGGCTCAGAAAAACTACCGCACCACTGCTGACTCCGGAATGTCATCTCTGTCGACTGGCACTCGATAGAAATTCGCCG
TTTGGCGTCTGCTCTGCCTGCCAAGCTTGGCTTGAGCACGGTTATCGCTGCGCACGCTGCGGTTTACCGACTCTTACCCC
AGTTGATCAGTGCGGGCAGTGTTTGGGCCAGCCTCCGCCGTGGCGAAAACTGATGTGTGTCGGCGATTACCGCTTTCCAC
TCAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCGCGCTTGGCTAAGCTACTCGCCACCCAG
ATTAACGAGCCAGCCCCGTTGCTGTGCAGTGTACCGCTACATTGGCAGCGACGTTGGCTACGCGGCTTTAATCAAAGCGA
TCTGCTGGCGCGCGAGTTAGCCAATGTGCTGAACATTGAATATGACCACCAACTCTTTGCACGCCGCCGAGCCACACCGC
ATCAACAAGGACTCAGCAAGGCGCAGCGAATCCACAACCTACGTGATGCGTTTGTGCTCAATCATCCGCCAAACCAACCA
CATGTTGCGATTGTGGACGATGTGGTGACCACAGGCAGTACGATCCGACATTTATGCGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCCACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

98.252

100

0.983
  comF Vibrio campbellii strain DS40M4

47.479

83.217

0.395