Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HPY06_RS19040 Genome accession   NZ_CP053804
Coordinates   189297..190157 (-) Length   286 a.a.
NCBI ID   WP_001887331.1    Uniprot ID   -
Organism   Vibrio cholerae strain SL6Y     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 184297..195157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY06_RS00880 (HPY06_00880) gspL 184555..185766 (+) 1212 WP_032476949.1 type II secretion system protein GspL -
  HPY06_RS00885 (HPY06_00885) gspM 185776..186273 (+) 498 WP_000661347.1 type II secretion system protein M -
  HPY06_RS00890 (HPY06_00890) - 186275..187033 (+) 759 WP_057563692.1 type II secretion system protein N -
  HPY06_RS00895 (HPY06_00895) cysQ 187085..187912 (-) 828 WP_000106799.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  HPY06_RS00900 (HPY06_00900) nudE 187935..188483 (-) 549 WP_000095812.1 ADP compounds hydrolase NudE -
  HPY06_RS00905 (HPY06_00905) nfuA 188622..189209 (-) 588 WP_000070178.1 Fe-S biogenesis protein NfuA -
  HPY06_RS19040 comF 189297..190157 (-) 861 WP_001887331.1 ComF family protein Machinery gene
  HPY06_RS00920 (HPY06_00920) bioH 190093..190854 (+) 762 WP_069216983.1 pimeloyl-ACP methyl ester esterase BioH -
  HPY06_RS00925 (HPY06_00925) - 191015..191485 (+) 471 WP_000961393.1 hypothetical protein -
  HPY06_RS00930 (HPY06_00930) - 191580..193901 (-) 2322 WP_175229742.1 Tex family protein -
  HPY06_RS00935 (HPY06_00935) greB 194146..194628 (+) 483 WP_001958996.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32557.46 Da        Isoelectric Point: 8.0588

>NTDB_id=447578 HPY06_RS19040 WP_001887331.1 189297..190157(-) (comF) [Vibrio cholerae strain SL6Y]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSISIFIHSANWQDEAHYPDSWLAMLTHWLRKTTAPLLTPECHLCRLALDTNSP
FGVCSACQAWLEHGYRCARCGLPTLTPVDQCGQCLSQPPPWRKLMCVGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLATQ
INEPAPLLCSVPLHWRRRWQRGFNQSDLLARELANVLNIEYDHQLFARRRATPHQQGLSKAQRIHNLRDAFVLNHPPNQP
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=447578 HPY06_RS19040 WP_001887331.1 189297..190157(-) (comF) [Vibrio cholerae strain SL6Y]
ATGCCCCAGCCGTGTACCAATACCAGATCTTGCCCTTGTCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
GTCTATTTCCATCTTCATCCACTCTGCCAATTGGCAAGATGAAGCACATTACCCCGATTCTTGGCTCGCTATGTTAACCC
ATTGGCTCAGAAAAACTACCGCACCACTGCTGACTCCGGAATGTCATCTCTGCCGACTGGCGCTCGATACAAATTCGCCG
TTTGGCGTCTGCTCTGCCTGCCAAGCTTGGCTTGAGCACGGTTATCGCTGCGCACGCTGCGGTTTACCGACTCTTACCCC
AGTTGACCAGTGCGGACAGTGTTTGAGTCAGCCTCCGCCGTGGCGAAAACTGATGTGTGTCGGCGATTACCGCTTCCCAC
TTAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCGCGCTTGGCTAAGCTACTCGCCACCCAG
ATTAACGAGCCCGCCCCTTTGCTGTGCAGCGTGCCACTGCATTGGCGGCGACGCTGGCAACGCGGCTTTAATCAAAGCGA
TCTGCTGGCACGTGAATTAGCCAATGTGCTGAACATTGAATATGACCACCAACTCTTTGCACGCCGCCGAGCCACACCGC
ATCAACAAGGACTCAGCAAGGCGCAGCGAATCCACAACCTACGTGATGCGTTTGTGCTGAATCATCCGCCAAACCAACCA
CATGTTGCGATTGTGGACGATGTGGTGACCACAGGCAGTACGATCCGACATTTATGCGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCCACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

98.951

100

0.99
  comF Vibrio campbellii strain DS40M4

46.639

83.217

0.388